View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19690_low_9 (Length: 395)
Name: NF19690_low_9
Description: NF19690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19690_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 15800845 - 15801213
Alignment:
| Q |
9 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15800845 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
15800944 |
T |
|
| Q |
109 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15800945 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattgg |
15801044 |
T |
|
| Q |
209 |
caaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801045 |
caaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagg |
15801144 |
T |
|
| Q |
309 |
gggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataat |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801145 |
gggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcataat |
15801213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 3312711 - 3313077
Alignment:
| Q |
9 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||| ||| || | ||||||| |||||||||||| |||||||| ||| |||| ||||||| |
|
|
| T |
3312711 |
aatatttattgttgcagtaatgaaagcaatactgtgaagcaaattgttagccaagttttgacaaaactagacaaaaaatacttacctctcccggattttc |
3312810 |
T |
|
| Q |
109 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattgg |
208 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||| |||| || | ||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3312811 |
cagttggactagaatcccgtgcggaacaatctattcggtatttaagacataattcagatggagtttgtttagtagggatttggggaatgggagggattgg |
3312910 |
T |
|
| Q |
209 |
caaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagg |
308 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
3312911 |
caaaagcaccattgccaaagtcatctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagagaagtttgggagaaagatagg |
3313010 |
T |
|
| Q |
309 |
gggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgcata |
375 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
3313011 |
ggtagaatcgatttacaagaacaacttctttcagatatcctcaaaacaaggaagataaaggtgcata |
3313077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 3362084 - 3362447
Alignment:
| Q |
9 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||| | | ||||||||||| |||||||| |||||||| ||| | |||||||||| |
|
|
| T |
3362084 |
aatatttattgttgcagtaatgaaagcaaagttgtgaaggaaattgtttcccaagttttgaaaaatctagacaataaatacttacctctgccagattttc |
3362183 |
T |
|
| Q |
109 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattgg |
208 |
Q |
| |
|
||| ||||||||| ||||||||||||| | ||||| ||| ||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3362184 |
aagttggattagaaccccgtgcggaaaagtcgattcgatttttaagacaaaatacaagaggagtttgtttagtagggatttgggggatgggggggattgg |
3362283 |
T |
|
| Q |
209 |
caaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagg |
308 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
3362284 |
caaaagcactattgccaaagtcatctacaatgatctttgttatgaatttgaaaatcaaagcttccttgctaatattagagaagtttgggagaaagatagg |
3362383 |
T |
|
| Q |
309 |
gggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgc |
372 |
Q |
| |
|
|| ||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
3362384 |
ggcagaatcgatttacaagaacaatttctttcagatatcctcaaaacaagaaagataaaggtgc |
3362447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 3393799 - 3393436
Alignment:
| Q |
9 |
aatatttattgttgcagtaatgaaagcagtgttgtgaaggaaatagttggcaatgttttgaaaaaactagacaagaaatacttgcctatcccagattttc |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||| | ||| |||||| |
|
|
| T |
3393799 |
aatatttgttgttgcagtaatcaaagcaaagttgtgaaggaaattgtttctcaagttttgaaaaatctagacaaaaaatacttacctctgccaaattttc |
3393700 |
T |
|
| Q |
109 |
cagtaggattagaatcccgtgcggaaaaattgattcagtttctaagaaagaatacaagaggagtttgtttagtagggatttggggaatgggagggattgg |
208 |
Q |
| |
|
||| |||||| || ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3393699 |
aagttggattaaaaccccgtgcggaaaagccgattcgatttttaagacaaaatacaagaaaagtttgtttagtagggatttgggggatgggggggattgg |
3393600 |
T |
|
| Q |
209 |
caaaagcaccattgccaaagtcgtctacaataatctttgttatgaatttgaagatcaaagcttccttgctaatattagacaagtttgggagaaagagagg |
308 |
Q |
| |
|
||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
3393599 |
caaaagcactattgccaaagtcatatacaatgatctttgttatgaatttgaagatcaaagcttcgttgctaatattagagaagtttgggagaaagatagg |
3393500 |
T |
|
| Q |
309 |
gggcaaattgatttacaagaacaacttctttcagatatccttaaaacaagaaatgtaaaggtgc |
372 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
3393499 |
ggcagaatcgatttacaagaacaacttctttcagatatcctgaaaacaagaaagataaaggtgc |
3393436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 25567853 - 25567913
Alignment:
| Q |
181 |
tagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataa |
241 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||| |||| | | |||||||| |
|
|
| T |
25567853 |
tagggatgtggggtatgggagggattggcaaaaccaccattgcaaaagccatttacaataa |
25567913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 5075883 - 5075823
Alignment:
| Q |
181 |
tagggatttggggaatgggagggattggcaaaagcaccattgccaaagtcgtctacaataa |
241 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||| ||||||||| |||| | | |||||||| |
|
|
| T |
5075883 |
tagggatttggggtatgggtgggattggtaaaaccaccattgcaaaagccatttacaataa |
5075823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University