View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19691_high_1 (Length: 818)
Name: NF19691_high_1
Description: NF19691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19691_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 808
Target Start/End: Complemental strand, 50555199 - 50554379
Alignment:
| Q |
18 |
attgtaagtcatgtcccagtttccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgttg |
117 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
50555199 |
attgtaagtcatgtccaagtttccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccgtatgaggcactatttccctgctggaagttg |
50555100 |
T |
|
| Q |
118 |
atggttggcgaaacatgtggcatgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgttta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
50555099 |
atggttggcgaaacatgtggcatgcggcgaat------------gttgagttgtggtggtgtgctcatttgacattgattatgaagaaattgattattta |
50555012 |
T |
|
| Q |
218 |
gtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcacctattataatagtatatgttagttaatttcttcaatcattgatatttattt |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50555011 |
gtgatgtggtgaaagagcttctagtgaccatatcctcagctaacttcacctattataatagtatatgttagttaatttcttcaatcagtgatatttattt |
50554912 |
T |
|
| Q |
318 |
tcgtatgcataatta-------agctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaat |
410 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50554911 |
tcgtatgaataattatataataagctcactgtataccttagctctcaaagcttcaacatctgattttagcactcggttatttgtatcagcctcatgaaat |
50554812 |
T |
|
| Q |
411 |
tgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgac |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| |
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|
| T |
50554811 |
tgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttcagtttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgac |
50554712 |
T |
|
| Q |
511 |
tacttatg-------------------ctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttc |
591 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50554711 |
tacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttc |
50554612 |
T |
|
| Q |
592 |
tccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcataatttgaaaaccacatataataag-- |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50554611 |
tccaccttgacctcctggctgactcgcaattagaatccttcctgaaaccatgtcatgaatcattattatatcataatttgaaaaccaaatataataagaa |
50554512 |
T |
|
| Q |
690 |
--------------aagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcg |
775 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554511 |
aagtgttgtatttaaagttagacggaaataccttctttggcgtttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcg |
50554412 |
T |
|
| Q |
776 |
gatggatccgatgaaccacttgctgtccctttg |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
50554411 |
gatggatccgatgaaccacttgctgtccctttg |
50554379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 331 - 518
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
331 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
430 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
|
| Q |
431 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
518 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
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| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 331 - 518
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
331 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
430 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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|
| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
431 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
518 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 50817758 - 50817528
Alignment:
| Q |
39 |
tccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgttgatggttggcgaaacatgtggc |
138 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||| || ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
50817758 |
tccaaacccaacaagatttaaattgtgttcgccaaccgtgactccattgtatcaggcactatttccctgctggacattgatggttggtgaaacatgtggc |
50817659 |
T |
|
| Q |
139 |
atgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttc |
238 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
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|
| T |
50817658 |
atgcagcgaatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttc |
50817559 |
T |
|
| Q |
239 |
tagtgaccatatcctcagctaacttcaccta |
269 |
Q |
| |
|
||||||| |||| || ||||||||||||| |
|
|
| T |
50817558 |
tagtgactatatgcttgactaacttcaccta |
50817528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 39 - 269
Target Start/End: Original strand, 50858106 - 50858336
Alignment:
| Q |
39 |
tccaaacccagcaagatttgaattgtgcacgccaaccgcaacaccaccatatgaggcactatttccctgctggacgttgatggttggcgaaacatgtggc |
138 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||| || ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
50858106 |
tccaaacccaacaagatttaaattgtgttcgccaaccgtgactccattgtatcaggcactatttccctgctggacattgatggttggtgaaacatgtggc |
50858205 |
T |
|
| Q |
139 |
atgcggcgaatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttc |
238 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |
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|
| T |
50858206 |
atgcagcgaatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttc |
50858305 |
T |
|
| Q |
239 |
tagtgaccatatcctcagctaacttcaccta |
269 |
Q |
| |
|
||||||| |||| || ||||||||||||| |
|
|
| T |
50858306 |
tagtgactatatgcttgactaacttcaccta |
50858336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 536 - 657
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
| Q |
536 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
635 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
|
|
| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50816994 |
T |
|
| Q |
636 |
aaaccatgtcatgaatcattat |
657 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50816993 |
aaaccatgtcatgaatcattat |
50816972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 536 - 657
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
| Q |
536 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
635 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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|
| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50858870 |
T |
|
| Q |
636 |
aaaccatgtcatgaatcattat |
657 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50858871 |
aaaccatgtcatgaatcattat |
50858892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 474
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
342 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
441 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||| || || | ||| || |||||||||| |||| ||| |||| ||| ||| ||| |
|
|
| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
442 |
gtgttgcattttccagtttcagtttttcaacct |
474 |
Q |
| |
|
| ||||||||||||| ||| || |||||||| |
|
|
| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 719 - 783
Target Start/End: Original strand, 1131520 - 1131584
Alignment:
| Q |
719 |
ttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatc |
783 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
1131520 |
ttcatatcaacagggtttgtactttgttcacaaggacctgcttcatcatcttcatcagatggatc |
1131584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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