View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19691_high_3 (Length: 474)
Name: NF19691_high_3
Description: NF19691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19691_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 43872632 - 43873095
Alignment:
| Q |
1 |
atagtgttctgctaataacagcaataacaatagtggtagtgaattttgcaattattgcatnnnnnnncacataaaacagatagcgagaacagtttcattg |
100 |
Q |
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| T |
43872632 |
atagtgttctgctaataacagcaataacaatagtggtagtgaattttgcaattattgcataaaaaaacacataaaacagatagcgagaacagtttcattg |
43872731 |
T |
|
| Q |
101 |
gatgataccaataagatttcgtaaatagccaagtagataatagtgcagcaagacaattttcataaacaaatgtgtagtatgaatgatgaactcgacaaga |
200 |
Q |
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| T |
43872732 |
gatgataccaataagatttcgtaaatagccaagtagataatagtgcggcaagacaattttcataaacaaatgtgtagtatgaatgatgaactggacaaga |
43872831 |
T |
|
| Q |
201 |
gataaggaatttatcatacatagcatatgctcgacgcccttcttcacaaactggaggtggagtaataagcacaataagcatagttggtgagcatgactga |
300 |
Q |
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| T |
43872832 |
gataaggaatttatcatacatagcatatgctcgacgcccttcttcacaaactggaggtggagtaataagcacaataagcatagttggtgagcatgactga |
43872931 |
T |
|
| Q |
301 |
aatcaaattttcatttacaatcaataagtgataacataattggccttttaggtataagggaaaaattcatgctaagcccaattttgttagtacagacagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43872932 |
aatcaaattttcatttacaatcaataagtgataacataattggcattttaggtataagggaaaaattcatgctaagcccaattttgttagtacagacagg |
43873031 |
T |
|
| Q |
401 |
--------ttactccttaacccaatgcagcactcaacgtagaagcaaacaacaaatgctgcaag |
456 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43873032 |
ttactccattactccataacccaatgcagcactcaacgtagaagcaaacaacaaatgctgcaag |
43873095 |
T |
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