View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19691_high_5 (Length: 284)
Name: NF19691_high_5
Description: NF19691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19691_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 9382975 - 9383227
Alignment:
| Q |
13 |
cagaggacggaaccaaagttaagtgaaaatattggtctatatttttgggagagttggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggc |
112 |
Q |
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| T |
9382975 |
cagaggacggaaccaaagttaagtgaaaatattggtccgtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggc |
9383074 |
T |
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| Q |
113 |
cgataatcggaagtttgaatagaggagatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataa |
212 |
Q |
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| T |
9383075 |
cgatgatcggaagtttgaatagaggagatggagggaggtttttttgacggtttaaaattggctggaaaataatgtagcaaatgagtgatgaaagaaataa |
9383174 |
T |
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| Q |
213 |
tgtgaaggccaatagtagaggttccatgatatgttgctatagtatattagttg |
265 |
Q |
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| T |
9383175 |
tgtgaaggccaatagtagaggttccatgatatgttgctatagtatattagttg |
9383227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 9400444 - 9400679
Alignment:
| Q |
13 |
cagaggacggaaccaaagttaagtgaaaatattggtctatatttttgggagagttggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggc |
112 |
Q |
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| T |
9400444 |
cagaggacggaaccaaagttaagtgaaaatattggtccgtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggc |
9400543 |
T |
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| Q |
113 |
cgataatcggaagtttgaatagaggagatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataa |
212 |
Q |
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| T |
9400544 |
caatgatcggaagtttgaatagaggcgatggagggaggtttttgtgacggtttaaaattggctggaaaattatgtagcaaatgagtgatgaaagaaataa |
9400643 |
T |
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| Q |
213 |
tgtgaaggccaatagtagaggttccatgatatgttg |
248 |
Q |
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| T |
9400644 |
tgtgaaggctaatagtagaggttccatggtatgttg |
9400679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 23243193 - 23243116
Alignment:
| Q |
82 |
tggagaaggggacctaacatgtgcatgtggccgataatcggaagtttgaatagaggagatggagggaggtttttgtga |
159 |
Q |
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| T |
23243193 |
tggaggagaggacctaagaggtgcatatggccaataattggaagtttgagaggaggtgatggagggaggtatttgtga |
23243116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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