View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19691_low_4 (Length: 449)
Name: NF19691_low_4
Description: NF19691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19691_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 1175485 - 1175223
Alignment:
| Q |
25 |
cgtcttgaaccactagtcgcttccactgtcgaatcccaaaagtttgggaatatatttgttctggtatttgatgatcgattcagtttgcacgctacaattc |
124 |
Q |
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| T |
1175485 |
cgtcttgaaccactagtcgcttccgctgtcgaatcccaaaagtttgggaatatatttgttctggtatttgatgatcaattcagtttgcacgttacaattc |
1175386 |
T |
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| Q |
125 |
cggtttgtttcttcttcctaggttacgctaatttaattagttggtcaacttttgatttcaatcgttaggtcttagtttgaattttgagtgctattggtgt |
224 |
Q |
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| T |
1175385 |
cggtttgtttcttcttcctaggttacgctaatttaattagttggtcaacttttgatttcaatcgttaggtcttagtttgaattttgagtgctattggtgt |
1175286 |
T |
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| Q |
225 |
agagttattcgacaccatttttgtttgtttcggtgatatgttttgaactcgcatggcatttgttt |
289 |
Q |
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| T |
1175285 |
agagttattcgacaccatttttgtttgcttcggtgatatg--ttgaactcgcatggcatttgttt |
1175223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 1175130 - 1174976
Alignment:
| Q |
284 |
ttgttttggaatcccatgagtcttggctattttcttttggtttgtcttacttggaaatgtgagtctgggtggtttctccgtagaaccactgtttgcaaag |
383 |
Q |
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| T |
1175130 |
ttgttttggaatcccatgagtcttggctattttcttttggtttgtcttacttggaaatgtgagtctgggtggtttctccgtagaaccactgtttgcaaag |
1175031 |
T |
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| Q |
384 |
agttgtaaagcaactttgagatttgatttggtacctcacaaatttctctaatatt |
438 |
Q |
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| T |
1175030 |
agttgtaaagcaactttgagatttgatttggtacctcacaaatttctctaatatt |
1174976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 3950644 - 3950915
Alignment:
| Q |
17 |
gtttgatccgtcttgaaccactagtcgcttccactgtcgaatcccaaaagtttgggaatatatttgttctggtatttgatgatcgattcagtttgcacgc |
116 |
Q |
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| T |
3950644 |
gtttgatccgccttgaaccacttgtcacttctgctatcgaatctcaaaagtttgagaatatatttggtttggtatttgatgatcgattcagtttgcacgt |
3950743 |
T |
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| Q |
117 |
tacaattccggtttgtttcttcttcctaggttacgctaatttaattagttggtcaacttttgatttcaatcgttaggtcttagtttgaattttgag-tgc |
215 |
Q |
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| T |
3950744 |
tacaattccggtttgtttcttcttcctaggttacgctaattttattagttggtaaacttttga-ttcagtcggttggtcttaatttgaattttgagttgc |
3950842 |
T |
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| Q |
216 |
tattggtgtagagttattcgacacca-tttttgtttgtttcggtgatatgttttgaactcgcatggcatttgttt |
289 |
Q |
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| T |
3950843 |
tattggtgtagagttattcgacaccattttttgtttgtttcggtgatatg--ttgaactctaatggcatttgttt |
3950915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 424
Target Start/End: Original strand, 3951015 - 3951140
Alignment:
| Q |
287 |
ttttggaatcccatgagtcttggctattttcttttggtttgtcttacttggaa-atgtgagtctgggtggtttctccgtagaaccactgtttgcaaagag |
385 |
Q |
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| T |
3951015 |
ttttggaatccg-tgagtcttggttattttcttttggtttgacttatttggaatatgtgagtctgg-tggcttctc-----------tgtttgcaaagag |
3951101 |
T |
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| Q |
386 |
ttgtaaagcaactttgagatttgatttggtacctcacaa |
424 |
Q |
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| T |
3951102 |
ttgtaaagcaactttgagatttgatttggtacctcacaa |
3951140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 54146811 - 54146866
Alignment:
| Q |
18 |
tttgatccgtcttgaaccactagtcgcttccactgtcgaatcccaaaagtttggga |
73 |
Q |
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| T |
54146811 |
tttgatccgccttgaaccgcttgtcgcttccgctgtcgaatcccaaaagtttggga |
54146866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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