View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19691_low_8 (Length: 237)
Name: NF19691_low_8
Description: NF19691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19691_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12288827 - 12289047
Alignment:
| Q |
1 |
cttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtatagaggaattgtaggttcactgagatactagtgtagcacaacgccgaacttatcat |
100 |
Q |
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| T |
12288827 |
cttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtatagaggaattgtaggttcactgagatacttgtgtagcgcaacgccgaacttagcat |
12288926 |
T |
|
| Q |
101 |
tttctattggattgataagcagatatatggagaatcctaaagtatctcatatattagcagcaaagagaataacgagatatgtgataagaatgtaatgatg |
200 |
Q |
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| T |
12288927 |
tttctattggattgataagcagatatatggagaatcctaaagtatctcatatattagcagcaaagagaataacgagatatgtgataagaatgtaatgatg |
12289026 |
T |
|
| Q |
201 |
attggttactcggatgcatat |
221 |
Q |
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| T |
12289027 |
attggttactcggatgcatat |
12289047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12317585 - 12317733
Alignment:
| Q |
1 |
cttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtatagaggaattgtaggttcactgagatactagtgtagcacaacgccgaacttatcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
12317585 |
cttgaaaaggatggaaatgaaaaagaagtgaatgctacaatgtatagaggaattgtacgttcactgagatacttgtgtagcacaacgccgaacttagcat |
12317684 |
T |
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| Q |
101 |
tttctattggattgataagcagatatatggagaatcctaaagtatctca |
149 |
Q |
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| T |
12317685 |
tttctattggattgataagcagatatatggagaatcctaaagtatctca |
12317733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 24413731 - 24413579
Alignment:
| Q |
32 |
atgctacaatgtatagaggaattgtaggttcactgagatactagtgtagcacaacgccgaacttatcattttctattggattgataagcagatatatgga |
131 |
Q |
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| T |
24413731 |
atgctacaatgtatagaggtatggtaggatcatcgaggtagctttgcagcacaaggccagacttagcattctcagttggaatgataagcagatatatgca |
24413632 |
T |
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| Q |
132 |
gaatcctaaagtatctcatatattagcagcaaagagaataacgagatatgtga |
184 |
Q |
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| T |
24413631 |
aaatcctaaggtttctcatctattagctacaaaaagggtaatgagatatgtga |
24413579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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