View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_high_1 (Length: 1118)
Name: NF19692_high_1
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 893; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 14 - 1102
Target Start/End: Original strand, 1715596 - 1716683
Alignment:
| Q |
14 |
aaaatagaaacaagatgggttgtggaagtagtctctcttttggcnnnnnnnnnnnnnn-gtaatcccttcattcttatttgtcagcaaaaattgtggtct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
1715596 |
aaaatagaaacaagatgggttgtggaagtagtctctcttttggcaaaaaaaaaaaaaaagtaatcccttcattcttatttatcagcaaaa-ttgtggtct |
1715694 |
T |
|
| Q |
113 |
caaatataagaaaaatttgttaaattcaaccctatttagtattattgtttt-aaaaatactgcttacttcaaactcaatttatttccagagcaagtacat |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1715695 |
caaatataagaaaaatttgttaaattcaaccctatttagtattattatttttaaaaatactgcttacttcaaactcaatttatttacagagcaagtacat |
1715794 |
T |
|
| Q |
212 |
tttttaacgatatttgaacggttaatataattttttattaaatagtctaatgagtagattcacacacattatatgtgaagaagtagagaatataaactca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
1715795 |
tttttaacgatatttgaacggttaatataattttttattaaatagtctaatgagtagattcacacacattatatatgaagaaatagagaatataaactcg |
1715894 |
T |
|
| Q |
312 |
acccttgcatatatctctggtagctatcagttgaactgtatttacgagttaacgttaacacaatttaaaccaatagttaattatatttggtggatgctcg |
411 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1715895 |
accatttcatatatctctggtagctatcagttgaactgtatttacgagttaacgttaacacaatttaaaccaatagttaattatatttggtggatgctcg |
1715994 |
T |
|
| Q |
412 |
atgaatacaacaaagtattgcaacacattaaccatatattacaannnnnnnnnnnngacaaagccatctattaaaattttaaacataattaatcatgatt |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1715995 |
atgaatacaacaaagtattgcaacacattaaccatatattacaattttttgtttttgacaaagccatctattaaaattttaaacataattaatcatgatt |
1716094 |
T |
|
| Q |
512 |
attaaccaaatgagttttcattttttaaagtaaatttggaaatccaactactaccagattgagacgagaataatttctatgccatgaaaatatttttcaa |
611 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1716095 |
attaaccaaatgagttttcattttttaaagtaaatttggaaatccaactactaccagattgagacgagaataaattctatgccatgaaaatatttttcaa |
1716194 |
T |
|
| Q |
612 |
tgaaattttggtcaatcatttatggctttgagtnnnnnnnnnnncttgagtttttccgaacccgtcactaataaggagagctcgttaaacatttgagtct |
711 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1716195 |
tgaaattttggtcaatcatttatggctttgagtaaaaaaaaaaacttgagtttttccgaacccgtcactaataaggagagttcgttaaacatttgagtct |
1716294 |
T |
|
| Q |
712 |
attcgattgttcaacttttgtccttgtctgtataacatgactattgactatgataaataatcttgtagcaaaatataaatagagtaattacaatttaagg |
811 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1716295 |
attcgattgttcaacttttgtccttgtctgtataacatgactattgactatgataaataatcttgtagcaaaatataaatagagtaattacaatttaagg |
1716394 |
T |
|
| Q |
812 |
gttatatttgcaagaacaaacaatgttagtacagtactggccgtttttcacctcaatgacagcaataccaacaaacgacaaaacaaaatatacctaggcc |
911 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1716395 |
gttatatttggaagaacaaacaatgttagtacagtactggccgtttttcacctcaatgatagcaataccaacaaacgacaaaacaaaatatacctaggcc |
1716494 |
T |
|
| Q |
912 |
gtcacaaattagttacaacaatgttactgtgaagctactatttttctactcaaaatttggctcaaagttttcaaagcaaccatttttcacattctcattc |
1011 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1716495 |
gtcacaaattagttacaacaatgtttctgtgaagctactatttttctactcaaaatttggctcaaagttttcaaagcaaccatttttcacattctcattc |
1716594 |
T |
|
| Q |
1012 |
tcagtttcttaacaaagatttgagctttttgaagaatatagtgtcaaactcaaacccatgatgaacaaagacaccatcatggaggtgaggg |
1102 |
Q |
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| T |
1716595 |
tcagtttcttaacaaagatttgagctttttgaaga--atagtgtcaaactcaaacccatgatgaacaaagacaccatcatggaggtgaggg |
1716683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 2556249 - 2556282
Alignment:
| Q |
269 |
attcacacacattatatgtgaagaagtagagaat |
302 |
Q |
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| T |
2556249 |
attcacacacattatatgtgaagaagtggagaat |
2556282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 12606752 - 12606723
Alignment:
| Q |
266 |
tagattcacacacattatatgtgaagaagt |
295 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12606752 |
tagattcacacacattatatgtgaagaagt |
12606723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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