View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19692_high_15 (Length: 241)

Name: NF19692_high_15
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19692_high_15
NF19692_high_15
[»] chr8 (1 HSPs)
chr8 (1-224)||(42312543-42312766)
[»] chr6 (3 HSPs)
chr6 (1-225)||(20909429-20909653)
chr6 (1-225)||(20923877-20924101)
chr6 (1-209)||(27445358-27445567)
[»] chr1 (1 HSPs)
chr1 (1-225)||(41326327-41326548)
[»] scaffold0003 (2 HSPs)
scaffold0003 (1-209)||(35121-35330)
scaffold0003 (1-209)||(41791-42000)
[»] chr7 (1 HSPs)
chr7 (75-209)||(11504723-11504856)
[»] chr3 (2 HSPs)
chr3 (1-67)||(50717679-50717744)
chr3 (1-67)||(50795104-50795169)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42312543 - 42312766
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||    
T  42312543 ggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggctaatttctgcttcatagttccattt 42312642  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42312643 ctctttt-aaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 42312741  T
Q  200 aatcatcaaataaagatgcagattt 224  Q
    |||||||||||||||||||||||||    
T  42312742 aatcatcaaataaagatgcagattt 42312766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20909429 - 20909653
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  20909429 ggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctgcttcagagttccattt 20909528  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  20909529 ctctttt-aaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttgg 20909627  T
Q  200 aatcatcaaataaagatgcagatttt 225  Q
    ||||||||||||||||||||||||||    
T  20909628 aatcatcaaataaagatgcagatttt 20909653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20923877 - 20924101
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||    
T  20923877 ggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtgtaggctaattcctgcttcagagttccattt 20923976  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  20923977 ctctttt-aaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttttgg 20924075  T
Q  200 aatcatcaaataaagatgcagatttt 225  Q
    ||||||||||||||||||||||||||    
T  20924076 aatcatcaaataaagatgcagatttt 20924101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 27445567 - 27445358
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| || ||||| |||||||||| | || | |    
T  27445567 ggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgcttcagaatgccctat 27445468  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
      ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||| ||||||    
T  27445467 tactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttgg 27445368  T
Q  200 aatcatcaaa 209  Q
    |||| |||||    
T  27445367 aatcctcaaa 27445358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 41326327 - 41326548
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtaggtaa-ttcctgcttcagagttccattt 99  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||| ||||||||||||||||    
T  41326327 ggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtatagggaaattcctacttcagagttccattt 41326426  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  41326427 ctctttt-aaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaa---tgatgttttgg 41326522  T
Q  200 aatcatcaaataaagatgcagatttt 225  Q
    ||||||||||||||||||||||||||    
T  41326523 aatcatcaaataaagatgcagatttt 41326548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35121 - 35330
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| || ||||| |||||||||||| || | |    
T  35121 ggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgcttcagagtgccctat 35220  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
      ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||| ||||||    
T  35221 tactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttgg 35320  T
Q  200 aatcatcaaa 209  Q
    |||| |||||    
T  35321 aatcctcaaa 35330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 41791 - 42000
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccattt 99  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| || ||||| |||||||||| | || | |    
T  41791 ggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttggctaattgctgcttcagaatgccctat 41890  T
Q  100 ctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttgg 199  Q
      ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||| ||||||    
T  41891 tactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttgg 41990  T
Q  200 aatcatcaaa 209  Q
    |||| |||||    
T  41991 aatcctcaaa 42000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 11504856 - 11504723
Alignment:
Q  75 taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtg 174  Q
    ||||| |||||| ||||| ||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||||||    
T  11504856 taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 11504758  T
Q  175 cataggagcaaacgtgatgttttggaatcatcaaa 209  Q
    |||||||| |||| | ||||||| |||||||||||    
T  11504757 cataggagtaaacataatgttttagaatcatcaaa 11504723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 50717744 - 50717679
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaat 67  Q
    |||| |||||||||  |||| |||||||||||||||||| |||||||||| ||| ||||||||||||    
T  50717744 ggagtgaaaaggaatcaataataagataacacttacaaa-gaactaaaaaaatatgcaaacaccaat 50717679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50795104 - 50795169
Alignment:
Q  1 ggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaat 67  Q
    |||| |||||||||  |||| |||||||||||||||||| |||||||||| ||| ||||||||||||    
T  50795104 ggagtgaaaaggaatcaataataagataacacttacaaa-gaactaaaaaaatatgcaaacaccaat 50795169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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