View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_high_8 (Length: 359)
Name: NF19692_high_8
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36003522 - 36003251
Alignment:
| Q |
1 |
ttctatagtttgagacttcattttgttgggagctatgggattgaaactcaagaaacatcgtttgctgcctttatagatggataaataggggaatgttaga |
100 |
Q |
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| T |
36003522 |
ttctatagtttgagacttcatcttgttgggagctatgggattgaaactcaagaaacatcgtttgcggcctttatagatggataaaaaggggaatgttaga |
36003423 |
T |
|
| Q |
101 |
tgcatctatggagttaagtgctacaaagcctaatcattttaggcatatctagtagaaaataaccacaatcaaagttaaaaactcgtttaaccgtccccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
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| T |
36003422 |
tgcatctatggagttaagtgctacaaagcctaatcattttaggcatatctagtagaaaataaccacaatc-aagttaaagactcgtttaaccgtcctcaa |
36003324 |
T |
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| Q |
201 |
actcgcattctattcaagtctataggagtctactggagtttagagaaaaattattttatgtgagtgaactcaa |
273 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36003323 |
actcgcattctattcaagtctatagaagtctactggagtttagagaaaaattattttatgtgagtgaactcaa |
36003251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 261 - 356
Target Start/End: Complemental strand, 36003217 - 36003122
Alignment:
| Q |
261 |
tgagtgaactcaagattttgcagccatggatatgagatggtcagatggctttctctgttcacttttatccatgttaagttatacctttgctactcc |
356 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
36003217 |
tgagttaactcaagattttgcagccatggatatgagatggtcagatggctttctctgttcacttttatccatgttaagttataccttggatactcc |
36003122 |
T |
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