View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_high_9 (Length: 311)
Name: NF19692_high_9
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 35742460 - 35742753
Alignment:
| Q |
1 |
cgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaa |
100 |
Q |
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| T |
35742460 |
cgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaa |
35742559 |
T |
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| Q |
101 |
tttagagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattc |
200 |
Q |
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| T |
35742560 |
cttagagtacgtcaattccttacaagggag---gtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattc |
35742656 |
T |
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| Q |
201 |
ctctctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
297 |
Q |
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| T |
35742657 |
ctctctgacaaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 35748832 - 35749116
Alignment:
| Q |
5 |
tgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaattta |
104 |
Q |
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|||||||| ||||||| ||||| |||||||||| | ||||||||||| ||| || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
35748832 |
tgcaccggactcgaatgtaacattagataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaaatccggaaaatttg |
35748931 |
T |
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| Q |
105 |
gagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctct |
204 |
Q |
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|||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||||| ||| ||||| |||||||||||||||||||| |||| |
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| T |
35748932 |
aagtaagtcaactccttacaagcgagga------cagtatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcc |
35749025 |
T |
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| Q |
205 |
ctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcgg |
295 |
Q |
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||| | | |||||||||| || |||| ||||||| |||||| || |||||||||| || |||||||||| |||||||| |||||| |
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| T |
35749026 |
tagacaagaacggaatccacgtactgaggaattcaattatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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