View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_12 (Length: 306)
Name: NF19692_low_12
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 4353101 - 4353364
Alignment:
| Q |
26 |
atggacctcaacatgatggtcaaacgccgtagcaagcttgccggaaaagccattaccaacctcatgtttcatcaccaccatggtggctccacctcaagcc |
125 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353101 |
atggacctcaacatgatggtcaaacgccgtag-aagcttgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctcaagcc |
4353199 |
T |
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| Q |
126 |
gccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcataactt |
225 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
4353200 |
gccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcataactt |
4353299 |
T |
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| Q |
226 |
cttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaag |
290 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
4353300 |
cttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaag |
4353364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 4359170 - 4358906
Alignment:
| Q |
26 |
atggacctcaacatgatggtcaaacgccgtagcaagcttgccggaaaagccattaccaacctcatgtttcatcaccaccatggtggctccacctcaagcc |
125 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359170 |
atggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctcaagcc |
4359071 |
T |
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| Q |
126 |
gccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcataactt |
225 |
Q |
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| T |
4359070 |
gccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcataactt |
4358971 |
T |
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| Q |
226 |
cttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaag |
290 |
Q |
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|||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
4358970 |
cttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaag |
4358906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 4349714 - 4349985
Alignment:
| Q |
26 |
atggacctcaacatgatggtcaaacgccgtagcaagcttgccggaaaagccattaccaacctcatgtttcatcaccaccatggtggctccacctcaagcc |
125 |
Q |
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|
|||||||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4349714 |
atggacctcaacatgatggttaaacaccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccacggtggctccacctcaagcc |
4349813 |
T |
|
| Q |
126 |
gccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtc------- |
218 |
Q |
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| T |
4349814 |
gtcgtaacgacacacgcctctctaccacaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaa |
4349913 |
T |
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| Q |
219 |
--ataacttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaa |
288 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
4349914 |
caaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaa |
4349985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 43475539 - 43475430
Alignment:
| Q |
26 |
atggacctcaacatgatggtcaaacgccgtagcaagcttgccggaaaagccattaccaacctcatgtt------tcatcaccaccatggtggctccacct |
119 |
Q |
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|||| ||| ||||||||| |||||||||| |||||||| ||||||||||||||| |||| || ||||| ||| ||| |||| ||||||||||||| |
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| T |
43475539 |
atgggcctaaacatgatgctcaaacgccgcagcaagctcgccggaaaagccattgccaatctaatgttccaccatcaccacaaccacggtggctccacct |
43475440 |
T |
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| Q |
120 |
caagccgccg |
129 |
Q |
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|||||||||| |
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| T |
43475439 |
caagccgccg |
43475430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 43486158 - 43486091
Alignment:
| Q |
26 |
atggacctcaacatgatggtcaaacgccgtagcaagcttgccggaaaagccattaccaacctcatgtt |
93 |
Q |
| |
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|||| ||| ||||||||| |||||||||| |||||||||||||||||||||||| |||| || ||||| |
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| T |
43486158 |
atgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccattgccaatctaatgtt |
43486091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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