View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_13 (Length: 271)
Name: NF19692_low_13
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 51369260 - 51369023
Alignment:
| Q |
22 |
gcaagagtttgactttgtaatttcatgggacaaagttcaagagtttgatcattgttaccaccaataatgaaaaatttattttccttannnnnnnagaagc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
51369260 |
gcaagagtttgactttgtaatttcatgggacaaagttcaagagtttgatcattgttaccaccaataatgaaaaatttattttcctcatttttttagaagc |
51369161 |
T |
|
| Q |
122 |
ccaagagataaatactaaacgattcacttcagtataggctaatgatcatgagtttgctctatttcattcatgattctgatgtgtagtctcagttcagaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51369160 |
ccaagagataaatactaaacgattcacttcagtataggctaatgatcatgagtttgctctatttcattcatgattctgatgtgtagtctcagttcagaaa |
51369061 |
T |
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| Q |
222 |
gggctagggagaatacatcgatcgtcattatggatatt |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
51369060 |
gggctagggagaatacatcgatcgtcattatggatatt |
51369023 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 11532681 - 11532719
Alignment:
| Q |
23 |
caagagtttgactttgtaatttcatgggacaaagttcaa |
61 |
Q |
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| T |
11532681 |
caagagtttgactttgtaatttcatgagataaagttcaa |
11532719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 20493314 - 20493350
Alignment:
| Q |
22 |
gcaagagtttgactttgtaatttcatgggacaaagtt |
58 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |
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| T |
20493314 |
gcaaaagtttgactttgtaatttcatggaacaaagtt |
20493350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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