View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_14 (Length: 253)
Name: NF19692_low_14
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 30743116 - 30743308
Alignment:
| Q |
37 |
cagagacaataattattttaatgggcnnnnnnnntcccataaacaattattatttggtttcaaaaccacttgaatggaataataatagcaccaacaatta |
136 |
Q |
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| T |
30743116 |
cagagacaataattattttaatgggcaaaaaaaatcccataaacaattattatttgttttcaaaaccacttgaatggaataataatagcaccaacaatta |
30743215 |
T |
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| Q |
137 |
gctattaattttagcacttcatgtccattcctatttatttagcagtttcaggctttgttttatatatgagtctgctttcttcgcatgtgaaaac |
230 |
Q |
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| T |
30743216 |
gctattaattttagcactacatgtccattcc-atttacttcgcagtttcaggctttgttttatatatgagtctgctttcttcgcatgtgaaaac |
30743308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 33896223 - 33896350
Alignment:
| Q |
15 |
aatataactgtatacaaagttgcagagacaataattattttaatgggcnnnnnnnn-tcccataaacaattattatttggtttcaaaaccacttgaatgg |
113 |
Q |
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| T |
33896223 |
aatataactgtatacaaagttgcagagacaataattattttaatgggcaaaaaaaaatcccataaacaattattatttggtttcaaaaccacttgaatgg |
33896322 |
T |
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| Q |
114 |
aataataatagcaccaacaattagctat |
141 |
Q |
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| T |
33896323 |
aataataatagcaccaacaattagctat |
33896350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 33896350 - 33896498
Alignment:
| Q |
84 |
tattatttggtttcaaaaccacttgaatggaataataata---gcaccaacaattagctattaattttagcacttcatgtccattcctatttatttagca |
180 |
Q |
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| T |
33896350 |
tattaattggtttcaaaaccacttgaatggaataataataatagcaccaacaatta----ttaattttagcactacatgtccattcccatttacttggca |
33896445 |
T |
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| Q |
181 |
gtttcaggctttgttttatatatgagtctgctttcttcgcatgtgaaaacttt |
233 |
Q |
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| T |
33896446 |
gtttcaggctttgttttctatacgagtctgctttcttcgtatgtgaaaacttt |
33896498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 9413055 - 9412915
Alignment:
| Q |
93 |
gtttcaaaaccacttgaatggaataataatagcaccaacaattagctattaattttagcacttcatgtccattcctatttatttagcagtttcaggcttt |
192 |
Q |
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| T |
9413055 |
gtttcaaaaccatttgaatggaataataatagcaccaaccattagctattaattttagcactacatgtccattcccatttacttagcagtttcaggcttt |
9412956 |
T |
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| Q |
193 |
gttttatatatgagtctgctttcttcgcatgtgaaaacttt |
233 |
Q |
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| T |
9412955 |
gttttatatatgagtctgctttcttcgcatgtgaaaacttt |
9412915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 9413166 - 9413060
Alignment:
| Q |
40 |
agacaataattattttaatgggcnnnnnnnntcccataaacaattattatttggtttcaaaaccacttgaatggaataataatagcaccaacaattagct |
139 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
9413166 |
agacaataattattttaatgggcaaaaaaaatcccataaacaattattatttggtttcaaaaccacttgaacggaataaaaatagcaccaacaattagct |
9413067 |
T |
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| Q |
140 |
attaatt |
146 |
Q |
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||||||| |
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| T |
9413066 |
attaatt |
9413060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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