View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_17 (Length: 240)
Name: NF19692_low_17
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_17 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35742422 - 35742199
Alignment:
| Q |
1 |
tcattttgtattatgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgt |
100 |
Q |
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| T |
35742422 |
tcattttgtattatgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgt |
35742323 |
T |
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| Q |
101 |
ctcaagaaagcaaataatctgattgatcttacactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggcttt |
200 |
Q |
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| T |
35742322 |
ctcaagaaagcaaataatctgattgatcttgcactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggcttt |
35742223 |
T |
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| Q |
201 |
ctattagttcacgacacggtattt |
224 |
Q |
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| T |
35742222 |
ctattagttcacgacgcggtattt |
35742199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 35748768 - 35748582
Alignment:
| Q |
23 |
tttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagcaaataatctga |
122 |
Q |
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| T |
35748768 |
tttgaatattttgatatttctgttactactctcaaagtcttattgctacaatttcatcaagagatgaagtcaatttgtctcaagaaagcaattaatttga |
35748669 |
T |
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| Q |
123 |
ttgatcttacactcaaagctactgagagctgc----acatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctatt |
205 |
Q |
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| T |
35748668 |
ttgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacattcaaaggctttctatt |
35748582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 35737619 - 35737573
Alignment:
| Q |
87 |
tgaagtcaatttgtctcaagaaagcaaataatctgattgatcttaca |
133 |
Q |
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| T |
35737619 |
tgaagtcaatttgtctcaaaaaagcacacaatcttattgatcttaca |
35737573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 3148 - 3104
Alignment:
| Q |
86 |
atgaagtcaatttgtctcaagaaagcaaataatctgattgatctt |
130 |
Q |
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| T |
3148 |
atgaagtcaatttgtctcaagaaagcaaagaatctgactgatctt |
3104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 10862894 - 10862933
Alignment:
| Q |
92 |
tcaatttgtctcaagaaagcaaataatctgattgatctta |
131 |
Q |
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| T |
10862894 |
tcaatttgtctcaagaatgcaaagaatctgattgatctta |
10862933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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