View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19692_low_2 (Length: 695)
Name: NF19692_low_2
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 20 - 686
Target Start/End: Original strand, 1080352 - 1081018
Alignment:
| Q |
20 |
ccagcatgccaagacggtcctggggctattgattggtatcatggattgcagccccttttgaatcattctaggacaataaaagtaaggagggcaagattgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080352 |
ccagcatgccaagacggtcctggggctattgattggtatcatggattgcagccccttttgaatcattctaggacaataaaagtaaggagggcaagattgc |
1080451 |
T |
|
| Q |
120 |
atcgagcgttttccgaaactttggaggaagagtgctcgatgagaggagctccattgataaggggtggtgaagccaatggactgtgggagggtctcgataa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080452 |
atcgagcgttttccgaaactttggaggaagagtgctcgatgagaggagctccattgataaggggtggtgaagccaatggactgtgggagggtctcgataa |
1080551 |
T |
|
| Q |
220 |
caaagttaaggatcgtgaaattgtttggcctccaatggttgtcattatgaatacgaaatacgagcaggatgaaaacaacaaggtacaatatattttcttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080552 |
caaagttaaggatcgtgaaattgtttggcctccaatggttgtcattatgaatacgaaatacgagcaggatgaaaacaacaaggtacaatatattttcttg |
1080651 |
T |
|
| Q |
320 |
tcttctaatttgatgaaatatatatgtagtcttagtctatttccttttatttgtttttaaatcgcatacacattgcagctagttgttgaatttttacttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080652 |
tcttctaatttgatgaaatatatatgtagtcttagtctatttccttttatttgtttttaaatcgcatacacattgcagctagttgttgaatttttacttc |
1080751 |
T |
|
| Q |
420 |
attaattattaaacaaattttcgtatctcctataagagtcttagtccttttgtgattttcttttaatttatctaatgtgaagttcctctgtagtttaacc |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080752 |
attaattgttaaacaaattttcgtatctcctataagagtcttagtccttttgtgattttcttttaatttatctaatgtgaagttcctctgtagtttaacc |
1080851 |
T |
|
| Q |
520 |
tcactgagttgaattgtagtggacaggaatggggaatcaagaactccttgattgcttcagtgattacggtgcattgaaggctcgacactcatatggtcca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080852 |
tcactgagttgaattgtagtggacaggaatggggaatcaagaactccttgattgcttcagtgattacggtgcattgaaggctcgacactcatatggtcca |
1080951 |
T |
|
| Q |
620 |
catgggcaccgagggatgagtgttttgatttttgaaccatctgtagcaggttatttagagtctgtgc |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080952 |
catgggcaccgagggatgagtgttttgatttttgaaccatctgtagcaggttatttagagtctgtgc |
1081018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 655
Target Start/End: Complemental strand, 44839307 - 44839254
Alignment:
| Q |
602 |
cgacactcatatggtccacatgggcaccgagggatgagtgttttgatttttgaa |
655 |
Q |
| |
|
|||||||||||||| || |||| || |||||||||||||||||||| |||||| |
|
|
| T |
44839307 |
cgacactcatatggccctaatggtcatcgagggatgagtgttttgatgtttgaa |
44839254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University