View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19692_low_3 (Length: 665)

Name: NF19692_low_3
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19692_low_3
NF19692_low_3
[»] chr5 (4 HSPs)
chr5 (1-455)||(8716823-8717296)
chr5 (1-172)||(1997508-1997679)
chr5 (256-327)||(1997861-1997932)
chr5 (1-62)||(14987581-14987642)
[»] chr1 (9 HSPs)
chr1 (1-342)||(39335457-39335813)
chr1 (353-646)||(39335789-39336084)
chr1 (1-278)||(17285610-17285888)
chr1 (1-162)||(19039841-19040001)
chr1 (346-422)||(17285530-17285606)
chr1 (268-327)||(19040207-19040266)
chr1 (256-327)||(383953-384024)
chr1 (377-448)||(383836-383907)
chr1 (289-320)||(19040804-19040835)
[»] chr8 (8 HSPs)
chr8 (87-450)||(36837676-36838043)
chr8 (230-455)||(36838484-36838709)
chr8 (230-450)||(36838263-36838484)
chr8 (230-450)||(36838043-36838263)
chr8 (383-454)||(44074009-44074080)
chr8 (256-332)||(44073886-44073962)
chr8 (289-330)||(26664269-26664310)
chr8 (289-353)||(39477055-39477121)
[»] chr4 (19 HSPs)
chr4 (201-455)||(26628976-26629230)
chr4 (6-218)||(26628749-26628961)
chr4 (4-179)||(15738403-15738578)
chr4 (1-179)||(23141758-23141936)
chr4 (357-455)||(26629321-26629419)
chr4 (1-151)||(53747378-53747528)
chr4 (1-172)||(8651538-8651709)
chr4 (1-172)||(8663345-8663516)
chr4 (256-327)||(23142111-23142182)
chr4 (216-300)||(50942807-50942891)
chr4 (384-455)||(50942959-50943030)
chr4 (268-320)||(15738161-15738213)
chr4 (256-327)||(22206755-22206826)
chr4 (289-327)||(22206470-22206508)
chr4 (289-327)||(22732918-22732956)
chr4 (307-352)||(22732856-22732901)
chr4 (4-36)||(22205609-22205641)
chr4 (406-454)||(22206633-22206681)
chr4 (307-351)||(23142549-23142593)
[»] chr2 (6 HSPs)
chr2 (201-455)||(28504500-28504755)
chr2 (3-130)||(28504314-28504441)
chr2 (1-172)||(541357-541529)
chr2 (289-353)||(9792899-9792963)
chr2 (176-218)||(28504443-28504485)
chr2 (405-455)||(43782743-43782793)
[»] chr3 (7 HSPs)
chr3 (1-172)||(33815394-33815565)
chr3 (1-127)||(50353702-50353828)
chr3 (257-327)||(33815747-33815817)
chr3 (18-112)||(13540605-13540699)
chr3 (289-327)||(48608767-48608805)
chr3 (384-456)||(5742144-5742216)
chr3 (384-456)||(5779103-5779175)
[»] chr6 (3 HSPs)
chr6 (1-151)||(24847567-24847716)
chr6 (289-327)||(30340457-30340495)
chr6 (406-455)||(24848354-24848403)
[»] scaffold0001 (2 HSPs)
scaffold0001 (64-163)||(406936-407035)
scaffold0001 (384-455)||(406575-406646)
[»] chr7 (6 HSPs)
chr7 (268-327)||(4658569-4658628)
chr7 (377-451)||(4658674-4658748)
chr7 (289-351)||(11650326-11650388)
chr7 (289-327)||(11650546-11650584)
chr7 (289-327)||(11650743-11650781)
chr7 (120-179)||(11650953-11651012)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 8716823 - 8717296
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgt-gtgttatttgtacccttcaagcagtgcaatgctaagagagttaatg 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8716823 gaaacaaaaaataagagatcaagaaagaagattaaacatggttagattttttttgtgttttttgtacccttcaagcaatgcaatgctaagagagttaatg 8716922  T
Q  100 actcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaagagtttttgtacataaaaat 199  Q
     |||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8716923 gctcgctttccatcggtaagtctaaactatcttgatctaaaaatgatgttagtagaggataatgggaatgcaatcgttaagagtttttgtacataaaaat 8717022  T
Q  200 g----------------atggtaggagatagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatc-t 282  Q
    |                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8717023 gatggtaggagatgataatggtaggagataataatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctt 8717122  T
Q  283 atatgagag-agaaaatgagtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataaatttgaatcaaagactgagattagatacat 381  Q
     |||||||| || ||||||||||||||||||||||||||||||||| |  | |||||| |||| |||| ||||||||||||    |||||||||||||||    
T  8717123 gtatgagagaaggaaatgagtagtttgaaaatagagtttgaatcaacggttgagattatattagcaatgaatttgaatcaactgttgagattagatacat 8717222  T
Q  382 acttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
      ||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||    
T  8717223 gtttaggagggaaaaaagctagtgattagggcgaacatgctagctaatcaactctaacttttataataaaggat 8717296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1997508 - 1997679
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||  ||     
T  1997508 gaaacaaaacataagagatcaagaaagaagatgaaacatggttagattttgatgtgttatttgtccccttcaagcagtgcaatgctaagagagtttgtgc 1997607  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaa 172  Q
     ||| ||||||| | |||||||||||||| | ||  ||||||||||| ||||||||||||||| ||||||||    
T  1997608 atcactttccattgttaagtctaaactgtttggacgtaaaaatgatggtaggagaggataatgtgaatgcaa 1997679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 1997861 - 1997932
Alignment:
Q  256 gttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||||  |||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||    
T  1997861 gttttcaattgccattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaa 1997932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14987642 - 14987581
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttattt 62  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  14987642 gaaacaaagcataagagatcaagaaagaagatgaaacatggttaaattttgttgtgttattt 14987581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 39335457 - 39335813
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39335457 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttttgt-ttatttgtacccttcaagcagtgcaatgctaagagagttaatga 39335555  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaagagtttttgtacataaaaatg 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  39335556 ctcactttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatacaatcgttaaaagtttttgtacataaaaatg 39335655  T
Q  201 atggtaggag----------------atagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctat 284  Q
    ||||||||||                || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39335656 atggtaggagatgataatggtaggatatggtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgatgtatctat 39335755  T
Q  285 atgagagagaaaatgagtagtttgaaaatagagtttgaatcaatgacttagattagat 342  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  39335756 atgagagaggaaatgagtagtttgaaaatagagtttgaatcaacgactgagattagat 39335813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 353 - 646
Target Start/End: Original strand, 39335789 - 39336084
Alignment:
Q  353 tttgaatcaaagactgagattagatacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaag 452  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39335789 tttgaatcaacgactgagattagatacatgcttaggagggaaaaaagctagtgattagggcaaacatgctagctaatcaactctagcttttataataaag 39335888  T
Q  453 gatgttatgnnnnnnnnnn--gggaagggtcatgttacgttggtattcgtatacacagatggttacaaggtacaatatcattgatttctattagactcca 550  Q
    ||||||| |            | ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39335889 gatgttacgtttttttttttagtgaagggtcatgttacgttggtattcatatatacagatggttacaaggtacaatatcattgatttctattagactcca 39335988  T
Q  551 ctcaaaatatttgatagaagcttgcttgggtatctttcaacacagatggacttcaagcctccctaggttaggttaggtcctacactagggggcaaa 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39335989 ctcaaaatatttgatagaagcttgcttgggtatctttcaacacagatggacttcaagcctccctaggttaggttaggtcctacactagggggcaaa 39336084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 17285888 - 17285610
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgt-gtgttatttgtacccttcaagcagtgcaatgctaagagagttaatg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||||||||||    
T  17285888 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagattttttttgtgttatttgtacccttcaagcagtgcatagctaagagagttaatg 17285789  T
Q  100 actcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaagagtttttgtacataaaaat 199  Q
      ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||    
T  17285788 gatcactttccattggtaagtctaaactgtcttggtctaaaaatgatgttaggagaggataatgggtatgcaatcgttaagagtttatgtacataaaaat 17285689  T
Q  200 gatggtaggagatagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgt 278  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17285688 gatggtaggagatggtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatggccattatgacgt 17285610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 19039841 - 19040001
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |  ||     
T  19039841 gaaacaaaacataacagatcaagaaagaagatgaaacatggttagattttgctgtgttatttgtacccttcaagcagtacaatgctaagagagcttgtgc 19039940  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataat 162  Q
     ||| ||||||| | |||||||||||||| |||  |  ||||||||| ||||||||||||||    
T  19039941 atcactttccattgttaagtctaaactgt-ttggacataaaatgatggtaggagaggataat 19040001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 17285606 - 17285530
Alignment:
Q  346 caataaatttgaatcaaagactgagattagatacatacttaggagggaaaaaagctagtaattagggcaaacatgct 422  Q
    |||| ||||| |||||| | |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  17285606 caatgaattttaatcaacggctgagattagatacgtgcttaggagggaaaaaagctagtgattagggcaaacatgct 17285530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 19040207 - 19040266
Alignment:
Q  268 cattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||    
T  19040207 cattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaa 19040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 384024 - 383953
Alignment:
Q  256 gttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||||  |||| ||||||| ||| |||||||||||||  ||| |||||||||||| ||||||||||||    
T  384024 gttttcaattgccatcatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaa 383953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 383907 - 383836
Alignment:
Q  377 tacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataat 448  Q
    ||||| ||||||||||||||| || |   ||||||| ||||||||||||| ||||||| || ||||||||||    
T  383907 tacatgcttaggagggaaaaatgcaacggattagggaaaacatgctagctcatcaactctaacttttataat 383836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 19040804 - 19040835
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagttt 320  Q
    ||||||||||||||||||||||||||||||||    
T  19040804 gagagaaaatgagtagtttgaaaatagagttt 19040835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 87 - 450
Target Start/End: Original strand, 36837676 - 36838043
Alignment:
Q  87 aagagagttaatgactcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaagagtttt 186  Q
    |||||||||||||  ||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  36837676 aagagagttaatggatcactttccatgggtaagtcttaattgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaatcgttaagagtttc 36837775  T
Q  187 tgtacataaaaatgatggtaggagatagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatat 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| |||    
T  36837776 tgtacataaaaatgatggtaggagatggtaatcgttaagagttatggtgatttgattaacattaattacgttttaaatgaccattatgacgtatctgtat 36837875  T
Q  287 gagagagaaaatgagtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataaatttgaatcaaagactgagattagataca----ta 382  Q
    ||||||| ||||||||||||||||||||||||||||||||| | || |||||| ||||| ||| |||||||||||| | |||||||||||||||    ||    
T  36837876 gagagaggaaatgagtagtttgaaaatagagtttgaatcaacggctgagattaaattaaaaatgaatttgaatcaacggctgagattagatacatgctta 36837975  T
Q  383 cttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataa 450  Q
     ||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  36837976 attaggagggaaaaaagctagcgattagggcaaacatgctagctaatcaactctagcttttataataa 36838043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 230 - 455
Target Start/End: Original strand, 36838484 - 36838709
Alignment:
Q  230 atggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaatg 329  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |    
T  36838484 atggtgatttgattagcattaattacgtttttaatgaccattatgacgtatttgtatgagagaggaaatgagtagtttgaaaatagagtttgaatcaacg 36838583  T
Q  330 acttagattagattaacaataaatttgaatcaaagactgagattagatacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaat 429  Q
     || ||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  36838584 gctgagattagattagcaatgaatttgaatcaacggctgagattagatacatgcttaggagggaaaaaagttagtgattagggcaaacatgctagctaat 36838683  T
Q  430 caactatagcttttataataaaggat 455  Q
    ||||| ||||||||||||||||||||    
T  36838684 caactctagcttttataataaaggat 36838709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 230 - 450
Target Start/End: Original strand, 36838263 - 36838484
Alignment:
Q  230 atggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaatg 329  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||      
T  36838263 atggtgatttgattagcattaattacgttttcaatgaccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaataaagtttgaatcaaca 36838362  T
Q  330 acttagattagattaacaataaatttgaatcaaagactgagattagatacatacttaggaggg-aaaaaagctagtaattagggcaaacatgctagctaa 428  Q
     || |||||| |||| |||| |||||||||||| | |||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||    
T  36838363 gctgagattaaattagcaatgaatttgaatcaacggctgagattagatacatgcttaggagggaaaaaaagctagtgattagggcaaacatgctagctaa 36838462  T
Q  429 tcaactatagcttttataataa 450  Q
    |||||| |||||||||||||||    
T  36838463 tcaactctagcttttataataa 36838484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 230 - 450
Target Start/End: Original strand, 36838043 - 36838263
Alignment:
Q  230 atggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaatg 329  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||| |||| || ||||| |||||||||||||||||||      
T  36838043 atggtgatttgattagcattaattacgttttcaatggccattatgacgtatctgtatgaaagaggaaattagaagtttaaaaatagagtttgaatcaaca 36838142  T
Q  330 acttagattagattaacaataaatttgaatcaaagactgagattagatacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaat 429  Q
     || |||||| ||||  ||| |||||||||||| | |||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||||    
T  36838143 gctgagattaaattagtaatgaatttgaatcaacggctgaaattagatacatgcttatgagggaaaaaaactagtgattagcgcaaacatgctagctaat 36838242  T
Q  430 caactatagcttttataataa 450  Q
     |||| |||||||||||||||    
T  36838243 aaactctagcttttataataa 36838263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 44074009 - 44074080
Alignment:
Q  383 cttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaagga 454  Q
    ||||||||||||||| || ||  |||| |||||||||||||||| ||||| | |||||||||||||||||||    
T  44074009 cttaggagggaaaaatgcaagggattaaggcaaacatgctagctcatcaagtctagcttttataataaagga 44074080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 44073886 - 44073962
Alignment:
Q  256 gttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaatgact 332  Q
    |||||||||  |||||||||| | ||| ||||||||| ||| |||  ||||||||||||||||||||||||| ||||    
T  44073886 gttttcaattgccattatgacatttctgtatgagagaaaaagtgatgagtttgaaaatagagtttgaatcaacgact 44073962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 26664310 - 26664269
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaatga 330  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  26664310 gagagaaaatgaggagtttgaaaatagagtttgaaccaatga 26664269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 39477121 - 39477055
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttga--atcaatgacttagattagattaacaataaat 353  Q
    ||||||||||||| ||||||||||||||||||||  ||||| |  | ||||||||||| ||||||||    
T  39477121 gagagaaaatgaggagtttgaaaatagagtttgatcatcaacgggtgagattagattagcaataaat 39477055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 201 - 455
Target Start/End: Original strand, 26628976 - 26629230
Alignment:
Q  201 atggtaggagatagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatga 300  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |    
T  26628976 atggtaggagatgataatcgttaagagttatggtgatttgattagcattaactacgttttcaatggccattatgacgtatctgtatgagagaggaaataa 26629075  T
Q  301 gtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataaatttgaatcaaagactgagattagatacatacttaggagggaaaaaagc 400  Q
    ||||||||||||||||||||||||||| | || ||||||||||| |||| ||||| |||||| | |||||||||||| ||| ||||||||||||||||||    
T  26629076 gtagtttgaaaatagagtttgaatcaacggctgagattagattagcaatgaattttaatcaacggctgagattagatgcatgcttaggagggaaaaaagc 26629175  T
Q  401 tagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26629176 tagtgattagggcaaacatgctagctaatcaactctagcttttataataaaggat 26629230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 26628749 - 26628961
Alignment:
Q  6 aaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatgactcat 105  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||     
T  26628749 aaaaaataagagaacaagaaaggagatgaaacatggttagatttttttgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatggatcac 26628848  T
Q  106 tttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaagagtttttgtacataaaaatgatggt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||    
T  26628849 tttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgggaatgcaatcgttaagagtttctgtacataaaaatgatagt 26628948  T
Q  206 aggagatagtaat 218  Q
    ||||||| |||||    
T  26628949 aggagatggtaat 26628961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 15738578 - 15738403
Alignment:
Q  4 acaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatgactc 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  ||  ||    
T  15738578 acaaaacataagagatcaagaaagaagatgaaacatggttagattttgatgtgttatttgtacccttcaagcagtgcaatgctaagagagttcgtgcatc 15738479  T
Q  104 attttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaa 179  Q
    | ||||||| | |||||||||| ||| | ||  ||||||| ||| |||||||||||||||||||||||| ||||||    
T  15738478 actttccattgttaagtctaaattgtttggacgtaaaaattatggtaggagaggataatgagaatgcaatcgttaa 15738403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 23141758 - 23141936
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||   ||     
T  23141758 gaaataaaacataagagatcaagaaagaagatgaaacatggttagattttgctgtgttatttgtacccttcaagtagtgcaatgctaagagagtatgtgc 23141857  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaa 179  Q
     ||  ||||||| | |||||||||||||| |  || ||||||||||| ||| ||||||||||| |||||||| ||||||    
T  23141858 atccctttccattgttaagtctaaactgtttgtatgtaaaaatgatggtagaagaggataatgggaatgcaatcgttaa 23141936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 26629321 - 26629419
Alignment:
Q  357 aatcaaagactgagattagatacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    |||||| | |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26629321 aatcaacggctgagattagatgcatgcttaggagggaaaaaagctagtgattagggcaaacatgctagctaatcaactctagcttttataataaaggat 26629419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 53747378 - 53747528
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    |||||| || ||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||  ||     
T  53747378 gaaacataacataagagatcaagaacgaagataaaacatggttagattttgttgtgttatttgtacccttcaagcagtgcaaggctaagagagtttgtgc 53747477  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttag 151  Q
     ||| ||||||| | |||||||||| ||| ||||   ||||||||||||||    
T  53747478 atcactttccattgttaagtctaaaatgttttgacggaaaaatgatgttag 53747528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 8651538 - 8651709
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || ||||||||||||  ||     
T  8651538 gaaacaaaacataagagatcaagaacgaagatgaaatatggttatattttgttgtgttatttgtacccttcaagcagtgaaaggctaagagagtttgtgc 8651637  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaa 172  Q
     ||| ||||||| | ||||||||| |||| ||||   ||||||||||||||  || |||| || ||||||||    
T  8651638 atcactttccattgttaagtctaacctgttttgacggaaaaatgatgttagccgatgatagtgggaatgcaa 8651709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 8663345 - 8663516
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || ||||||||||||  ||     
T  8663345 gaaacaaaacataagagatcaagaacgaagatgaaatatggttatattttgttgtgttatttgtacccttcaagcagtgaaaggctaagagagtttgtgc 8663444  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaa 172  Q
     ||| ||||||| | ||||||||| |||| ||||   ||||||||||||||  || |||| || ||||||||    
T  8663445 atcactttccattgttaagtctaacctgttttgacggaaaaatgatgttagccgatgatagtgggaatgcaa 8663516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 23142111 - 23142182
Alignment:
Q  256 gttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||||  |||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  23142111 gttttcaattgccattatgccgtttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaa 23142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 50942807 - 50942891
Alignment:
Q  216 aatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatga 300  Q
    |||||||||||||||||||| ||| ||||||||||| || ||||||| ||  ||||||||| ||||| |||||||||| ||||||    
T  50942807 aatcgttaagagttatggtggttttattagcattaaatatgttttcattggtcattatgacctatctgtatgagagaggaaatga 50942891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 50942959 - 50943030
Alignment:
Q  384 ttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    ||||||||||||| ||||||  ||||||||||||||| ||||||  ||||| ||||||||||||||||||||    
T  50942959 ttaggagggaaaatagctagagattagggcaaacatgatagctagacaactctagcttttataataaaggat 50943030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 15738213 - 15738161
Alignment:
Q  268 cattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagttt 320  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  15738213 cattatgacgtttctgtatgagagagaaaatgaggagtttgaaaatagagttt 15738161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 22206826 - 22206755
Alignment:
Q  256 gttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||||  |||||||||| | ||| |||||||||||||  ||| |||||||||||| ||||||||||||    
T  22206826 gttttcaattgccattatgacatttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaa 22206755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 22206508 - 22206470
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  22206508 gagagaaaatgaggagtttaaaaatagagtttgaatcaa 22206470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 22732956 - 22732918
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||||| || |||||||||||||||||||||||||    
T  22732956 gagagaaaataaggagtttgaaaatagagtttgaatcaa 22732918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 22732901 - 22732856
Alignment:
Q  307 tgaaaatagagtttgaatcaatgacttagattagattaacaataaa 352  Q
    |||||||||||||||||||||||  | ||||||||||| |||||||    
T  22732901 tgaaaatagagtttgaatcaatgggtgagattagattagcaataaa 22732856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 22205641 - 22205609
Alignment:
Q  4 acaaaaaataagagatcaagaaagaagatgaaa 36  Q
    |||||| ||||||||||||||||||||||||||    
T  22205641 acaaaacataagagatcaagaaagaagatgaaa 22205609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 22206681 - 22206633
Alignment:
Q  406 attagggcaaacatgctagctaatcaactatagcttttataataaagga 454  Q
    |||||| ||| |||||||||| ||||| | |||||||||||||||||||    
T  22206681 attaggacaagcatgctagctcatcaagtctagcttttataataaagga 22206633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 23142549 - 23142593
Alignment:
Q  307 tgaaaatagagtttgaatcaatgacttagattagattaacaataa 351  Q
    |||||||||||||||||||||||  | ||||||||||| ||||||    
T  23142549 tgaaaatagagtttgaatcaatgggtaagattagattagcaataa 23142593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 201 - 455
Target Start/End: Original strand, 28504500 - 28504755
Alignment:
Q  201 atggtaggagatagtaatcgttaagagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctatatgagagagaaaatga 300  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28504500 atggtaggagatagtaatcgttaggagttatggtgatttgattagcattaactacgttttcaatgaccattatgacgtatctgtatgagagaggaaatga 28504599  T
Q  301 gtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataaatttgaatcaaagactgagattagatacatacttaggagggaa-aaaag 399  Q
    |||||||||||||||| |||||||||| | |  |||||||||||||||| ||||| ||||||   |||||||| ||||||| |||||||||||| |||||    
T  28504600 gtagtttgaaaatagaatttgaatcaacggcggagattagattaacaatgaattttaatcaacagctgagatttgatacatgcttaggagggaataaaag 28504699  T
Q  400 ctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    ||||| |||||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  28504700 ctagtgattaggacaaacatgctagataatcaactctagcttttataataaaggat 28504755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 28504314 - 28504441
Alignment:
Q  3 aacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatgact 102  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  |    
T  28504314 aacaaaaaataagagatcaagaaagaagatgaatcatggttagatttttttgtgttatttgtacccttcaagcagtgaaatgctaagagagttaatggat 28504413  T
Q  103 cattttccatcggtaagtctaaactgtc 130  Q
    || |||||||| ||||||||||||||||    
T  28504414 cactttccatcagtaagtctaaactgtc 28504441  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 541357 - 541529
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggtta--gatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaat 98  Q
    ||||||||| |||||||||||| ||||||||||||||    |||  ||||||  ||||||||||||||||||||| || ||||| ||||||||||||  |    
T  541357 gaaacaaaacataagagatcaataaagaagatgaaactatattaacgattttgttgtgttatttgtacccttcaaacaatgcaaggctaagagagtttgt 541456  T
Q  99 gactcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaa 172  Q
    |  ||| |||||||   |||||||||||||| ||||  || |||||| | | ||||||||| ||| ||||||||    
T  541457 gcttcactttccatttttaagtctaaactgttttgacgtacaaatgaaggtgggagaggatcatg-gaatgcaa 541529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 9792963 - 9792899
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataaat 353  Q
    |||| |||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  9792963 gagaaaaaatgaggagtttgaaaatagagtttgaatcaacggctgagattagattaacaataaat 9792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 28504443 - 28504485
Alignment:
Q  176 ttaagagtttttgtacataaaaatgatggtaggagatagtaat 218  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  28504443 ttaagagtttatgtacataaaaatgatggtaggagatggtaat 28504485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 455
Target Start/End: Complemental strand, 43782793 - 43782743
Alignment:
Q  405 aattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    |||||||||||||||| |||| || ||| | ||||||||||||||||||||    
T  43782793 aattagggcaaacatggtagccaaccaagtctagcttttataataaaggat 43782743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 33815394 - 33815565
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||  ||     
T  33815394 gaaacgaaacataagagatcaagaaagaagatgaaacatggttagattttgccgtgttatttgtatccttcaagcagtgcaatgctaagagagttggtgc 33815493  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaa 172  Q
     ||| ||||||| | |||||||||||||| | ||  ||||||||||| ||||||||||||||| ||||||||    
T  33815494 atcactttccattgttaagtctaaactgtttggacataaaaatgatgataggagaggataatgggaatgcaa 33815565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 50353702 - 50353828
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| ||| ||||||||||||||||||||||||||  ||||||||   ||||||||| ||||||||||||  ||||| ||||||||||| ||||     
T  50353702 gaaacaaaacataggagatcaagaaagaagatgaaacatgactagattttgtagtgttatttttacccttcaagccctgcaaggctaagagagtcaatgc 50353801  T
Q  101 ctcattttccatcggtaagtctaaact 127  Q
     ||| ||||||| | ||||||||||||    
T  50353802 atcactttccattgttaagtctaaact 50353828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 33815747 - 33815817
Alignment:
Q  257 ttttcaatgaccattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||  |||||||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  33815747 ttttcaattgccattatgacatttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaa 33815817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 13540699 - 13540605
Alignment:
Q  18 atcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatgactcattttccat 112  Q
    |||||||||||||| |||||||||||||||| |  | ||| ||| ||| |||||||||||||||||||||| ||||||  ||  |||||||||||    
T  13540699 atcaagaaagaagaagaaacatggttagattgtgttatgtgattcgtatccttcaagcagtgcaatgctaacagagtttgtgcatcattttccat 13540605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 48608767 - 48608805
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  48608767 gagagaaaatgaggagtttgaaaatagagtttgaatcaa 48608805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 456
Target Start/End: Original strand, 5742144 - 5742216
Alignment:
Q  384 ttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggatg 456  Q
    |||||||||||||| | |||  ||||||||||||||| |||| || ||| | |||||||||| ||||||||||    
T  5742144 ttaggagggaaaaatgttagggattagggcaaacatggtagccaaccaagtctagcttttatgataaaggatg 5742216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 384 - 456
Target Start/End: Original strand, 5779103 - 5779175
Alignment:
Q  384 ttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggatg 456  Q
    |||||||||||||| | |||  ||||||||||||||| |||| || ||| | |||||||||| ||||||||||    
T  5779103 ttaggagggaaaaatgttagggattagggcaaacatggtagccaaccaagtctagcttttatgataaaggatg 5779175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 24847567 - 24847716
Alignment:
Q  1 gaaacaaaaaataagagatcaagaaagaagatgaaacatggttagatttttgtgtgttatttgtacccttcaagcagtgcaatgctaagagagttaatga 100  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||  | |    
T  24847567 gaaacaaaacataagagatcaagaacgaagatgaaacatggttagattttgttgtgttatttgtacccttcaagcagtgcaaggctaagagagtttgtca 24847666  T
Q  101 ctcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttag 151  Q
     ||| ||||||| | ||||||||| |||| ||||   ||||||||||||||    
T  24847667 -tcactttccattgttaagtctaacctgttttgacggaaaaatgatgttag 24847716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 30340457 - 30340495
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  30340457 gagagaaaatgaggagtttgaaaatagagtttgaatcaa 30340495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 24848354 - 24848403
Alignment:
Q  406 attagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    |||||||||||||||||||||   ||| | ||||||||||||||||||||    
T  24848354 attagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 407035 - 406936
Alignment:
Q  64 tacccttcaagcagtgcaatgctaagagagttaatgactcattttccatcggtaagtctaaactgtcttgatctaaaaatgatgttaggagaggataatg 163  Q
    ||||||||||||||||||||||||||||||||  ||  ||| ||||||| | |||||||||||| | ||||| ||||||||||| ||||||||| |||||    
T  407035 tacccttcaagcagtgcaatgctaagagagtttgtgcatcactttccattgttaagtctaaactattttgatgtaaaaatgatggtaggagaggttaatg 406936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 406646 - 406575
Alignment:
Q  384 ttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaaggat 455  Q
    ||||||||||||||||||||  |||||  |||||||| | || || ||| | ||||||||||||||||||||    
T  406646 ttaggagggaaaaaagctaggtattagatcaaacatgtttgccaaccaagtgtagcttttataataaaggat 406575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 4658569 - 4658628
Alignment:
Q  268 cattatgacgtatctatatgagagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    |||||||| || ||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  4658569 cattatgaagtttctgtatgagagagaaagtgaggagtttgaaaatagagtttgaatcaa 4658628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 4658674 - 4658748
Alignment:
Q  377 tacatacttaggagggaaaaaagctagtaattagggcaaacatgctagctaatcaactatagcttttataataaa 451  Q
    ||||| |||||||| |||||| || ||  ||||||||||||||||||||| ||||| | ||||||||||||||||    
T  4658674 tacatgcttaggagagaaaaatgcaagggattagggcaaacatgctagctcatcaagtctagcttttataataaa 4658748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 11650388 - 11650326
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaatgacttagattagattaacaataa 351  Q
    ||||||||||||| ||||||||||||||||||||||||| |  | ||||||||||| ||||||    
T  11650388 gagagaaaatgaggagtttgaaaatagagtttgaatcaacggttgagattagattagcaataa 11650326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 11650584 - 11650546
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  11650584 gagagaaaatgaggagtttgaaaatagagtttgaatcaa 11650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 11650781 - 11650743
Alignment:
Q  289 gagagaaaatgagtagtttgaaaatagagtttgaatcaa 327  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  11650781 gagagaaaatgaggagtttgaaaatagagtttgaatcaa 11650743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 11651012 - 11650953
Alignment:
Q  120 tctaaactgtcttgatctaaaaatgatgttaggagaggataatgagaatgcaaccgttaa 179  Q
    |||||||||| ||||| ||||||| ||| ||||||||||||||| | |||||| ||||||    
T  11651012 tctaaactgttttgatgtaaaaattatggtaggagaggataatgggtatgcaatcgttaa 11650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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