View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19692_low_4 (Length: 661)

Name: NF19692_low_4
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19692_low_4
NF19692_low_4
[»] chr4 (16 HSPs)
chr4 (20-648)||(3254051-3254681)
chr4 (455-568)||(28497486-28497600)
chr4 (468-562)||(35555831-35555927)
chr4 (364-550)||(47611741-47611929)
chr4 (462-568)||(54470203-54470311)
chr4 (480-560)||(29398822-29398903)
chr4 (466-568)||(17900476-17900580)
chr4 (487-558)||(42639224-42639296)
chr4 (487-568)||(51252665-51252747)
chr4 (506-562)||(31459032-31459089)
chr4 (480-568)||(41192832-41192921)
chr4 (506-562)||(55768724-55768781)
chr4 (506-562)||(55832980-55833037)
chr4 (245-289)||(3274011-3274055)
chr4 (480-551)||(42285897-42285969)
chr4 (506-557)||(49987435-49987487)
[»] chr1 (16 HSPs)
chr1 (449-568)||(2544595-2544716)
chr1 (455-595)||(35828721-35828863)
chr1 (494-568)||(27848016-27848091)
chr1 (479-568)||(43423715-43423805)
chr1 (455-561)||(36339974-36340082)
chr1 (479-562)||(48431602-48431686)
chr1 (448-526)||(10569231-10569310)
chr1 (479-593)||(19908235-19908350)
chr1 (487-568)||(1661426-1661508)
chr1 (515-568)||(52561843-52561897)
chr1 (487-567)||(8343062-8343143)
chr1 (495-599)||(9509283-9509388)
chr1 (494-562)||(32404737-32404806)
chr1 (494-561)||(5338727-5338795)
chr1 (495-562)||(15085936-15086004)
chr1 (455-561)||(40416374-40416482)
[»] chr2 (17 HSPs)
chr2 (455-568)||(43752118-43752233)
chr2 (494-551)||(9578914-9578972)
chr2 (462-562)||(23714439-23714541)
chr2 (462-562)||(24102111-24102213)
chr2 (455-526)||(3481180-3481252)
chr2 (513-568)||(18958903-18958959)
chr2 (495-562)||(45367837-45367905)
chr2 (488-562)||(8180782-8180857)
chr2 (447-568)||(12141540-12141663)
chr2 (488-562)||(25834683-25834758)
chr2 (462-528)||(42543272-42543339)
chr2 (539-595)||(11017285-11017339)
chr2 (506-562)||(19024182-19024239)
chr2 (505-568)||(6218963-6219027)
chr2 (496-599)||(9556582-9556685)
chr2 (495-562)||(11992320-11992388)
chr2 (505-568)||(41330125-41330189)
[»] chr6 (7 HSPs)
chr6 (455-568)||(14389339-14389453)
chr6 (373-568)||(9593797-9593992)
chr6 (494-562)||(608159-608228)
chr6 (85-162)||(12645266-12645343)
chr6 (494-594)||(33084028-33084129)
chr6 (495-562)||(5258360-5258428)
chr6 (459-556)||(24665818-24665918)
[»] chr5 (17 HSPs)
chr5 (456-568)||(79509-79623)
chr5 (484-568)||(33667212-33667297)
chr5 (495-572)||(31636132-31636210)
chr5 (483-599)||(6888958-6889075)
chr5 (513-568)||(14667759-14667815)
chr5 (514-562)||(27895-27944)
chr5 (479-599)||(6859346-6859467)
chr5 (487-595)||(14749276-14749385)
chr5 (466-552)||(42199298-42199386)
chr5 (103-150)||(24872946-24872993)
chr5 (528-594)||(37124539-37124603)
chr5 (448-568)||(2712940-2713062)
chr5 (494-562)||(28676597-28676666)
chr5 (495-562)||(14665716-14665784)
chr5 (507-562)||(15168794-15168850)
chr5 (495-562)||(16347590-16347658)
chr5 (495-562)||(38684969-38685037)
[»] chr3 (14 HSPs)
chr3 (505-595)||(54365199-54365287)
chr3 (463-568)||(36820140-36820247)
chr3 (491-568)||(50960841-50960919)
chr3 (505-568)||(26490311-26490375)
chr3 (455-560)||(42510187-42510292)
chr3 (509-568)||(44134056-44134116)
chr3 (505-572)||(27917562-27917630)
chr3 (373-595)||(39600770-39600994)
chr3 (495-562)||(49503766-49503834)
chr3 (505-567)||(54128375-54128438)
chr3 (480-567)||(2340911-2340999)
chr3 (496-551)||(21200561-21200617)
chr3 (466-568)||(34719254-34719358)
chr3 (495-562)||(47233808-47233876)
[»] chr8 (15 HSPs)
chr8 (455-562)||(36143367-36143476)
chr8 (513-593)||(45512725-45512808)
chr8 (487-595)||(44681243-44681352)
chr8 (447-561)||(43904828-43904947)
chr8 (463-595)||(44373745-44373879)
chr8 (505-562)||(18752098-18752155)
chr8 (514-599)||(33511325-33511407)
chr8 (505-568)||(41444548-41444612)
chr8 (513-595)||(13171879-13171962)
chr8 (496-550)||(41971991-41972046)
chr8 (505-562)||(45419239-45419297)
chr8 (455-599)||(10824335-10824477)
chr8 (479-594)||(32043560-32043676)
chr8 (496-551)||(35643814-35643870)
chr8 (458-525)||(39953438-39953506)
[»] chr7 (15 HSPs)
chr7 (462-568)||(48736077-48736185)
chr7 (466-568)||(36514389-36514493)
chr7 (482-562)||(36101964-36102045)
chr7 (505-568)||(7189448-7189512)
chr7 (479-562)||(42187472-42187556)
chr7 (505-562)||(26742118-26742176)
chr7 (505-562)||(40169651-40169709)
chr7 (507-568)||(47848670-47848732)
chr7 (482-527)||(16013326-16013371)
chr7 (459-561)||(12966025-12966129)
chr7 (505-568)||(27893770-27893834)
chr7 (505-568)||(38920790-38920854)
chr7 (495-562)||(43281676-43281744)
chr7 (495-562)||(45836692-45836760)
chr7 (516-551)||(47236238-47236274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (494-568)||(44079-44154)


Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 20 - 648
Target Start/End: Complemental strand, 3254681 - 3254051
Alignment:
Q  20 atggtggaccaagtggtggagttactaggccaagtagtagcatacagaagacatgcgccatcatcatacttatcggagaggagatcaacccataatttat 119  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254681 atggtggatcaagtggtggagttactaggccgagtagtagcatacagaagacatgcgccatcatcatacttatcggagaggagatcaacccataatttat 3254582  T
Q  120 tagaatattgaaacatatcccaaactagcttctcaaggagacatgtgttggtttctt-----------attcctaggccaccttcatatatatacttggg 208  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||      ||||||    
T  3254581 tagaagattggaacatatcccaaactagcttctcaaggagacatgtgttggtttctctggctgttctgattcctaggccaccttcata------cttggg 3254488  T
Q  209 tctaacaaatatttttaagaaaggaaaactaaagagtgttggaaaaaataggaaagagaaattacaaaataacaacaacaaacaaccaaataattttcta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3254487 tctaacaaatatttttaagaaaggaaaactaaagagtgttggaaaaaataggaaagagaaattacaaaataacaacaacaaacaaccaaataattttcga 3254388  T
Q  309 ctaaatagcaatgactatatgaatcaaacaacgtcacagtattctataataacttatattttggtccaactcactaacctcttagtgattcctaatagtt 408  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3254387 ctaaatagcaatgactacatgaatcaaacaacgttacagtattctataataacttatattttggtccaactcactaatctcttagtgattcctaatagtt 3254288  T
Q  409 tctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttcatttgatctaccctcctactacataatccataggtcttcacactac 508  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  3254287 tctcttaaaatttttctagttcttcatctatcttgaagaatctgattatccttcatttgatctaccctcctactacataattcataggtcttcacactat 3254188  T
Q  509 atgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatatgatctcata 608  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  3254187 atgtccaaaccacctaagctattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcat---atctcata 3254091  T
Q  609 tattcttacgacaaaagaacctaacattctcgtctctgct 648  Q
     |||||||||||||||||||||||||||||||||||||||    
T  3254090 cattcttacgacaaaagaacctaacattctcgtctctgct 3254051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 568
Target Start/End: Complemental strand, 28497600 - 28497486
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 553  Q
    |||||| ||| |||||||| ||||| ||||||||||| | | |||||| | ||||||| ||||||||||||||   |||||||  |||||||||||||||    
T  28497600 tatcctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcctttttccacaatcttttctactaaa 28497501  T
Q  554 ggtgctaccacaact 568  Q
    ||||||||| |||||    
T  28497500 ggtgctaccccaact 28497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 562
Target Start/End: Original strand, 35555831 - 35555927
Alignment:
Q  468 atctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||| |||||| ||||| |||||| |||||||| | ||| ||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||    
T  35555831 atctactctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 35555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 47611929 - 47611741
Alignment:
Q  364 atattttggtccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttca 463  Q
    |||||||||||||||||| ||  ||| ||||  ||||||||||||||  ||| ||  ||||||| ||||| |||  ||  |||  | ||| | |||| ||    
T  47611929 atattttggtccaactcattagtctcctagtctttcctaatagtttcaattataatttttctaggtcttcctctgcctctaagggtctgactctcctcca 47611830  T
Q  464 tttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctact 550  Q
    | |||| ||| ||||| | |||| ||||  ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  47611829 tctgatttactctccttattacaaaatctctaggtcttctctctacatgcccaaaccacctaagcctattttccatcatcttttctact 47611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 462 - 568
Target Start/End: Complemental strand, 54470311 - 54470203
Alignment:
Q  462 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 559  Q
    |||||||| ||| ||||| ||||||||||  | | |||||| | ||||||| ||||||||| ||||| || |||||| |||||||||||||| |||||||    
T  54470311 catttgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgct 54470212  T
Q  560 accacaact 568  Q
    ||| |||||    
T  54470211 accccaact 54470203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 29398903 - 29398822
Alignment:
Q  480 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 560  Q
    |||||| |||| |||||||||| | ||||||| ||||||||| ||||  ||||||||| |||||||||||| | ||||||||    
T  29398903 actacagaatctataggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttctaccataggtgcta 29398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 568
Target Start/End: Complemental strand, 17900580 - 17900476
Alignment:
Q  466 tgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 563  Q
    |||||||| |||||| |||||||||||| |||||||| | |||| || ||||||||| | ||| || |||| | | |||||||||||| ||||||||||     
T  17900580 tgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccc 17900481  T
Q  564 caact 568  Q
    |||||    
T  17900480 caact 17900476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 558
Target Start/End: Original strand, 42639224 - 42639296
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgc 558  Q
    |||||||| |||||| | ||||||||||||||||||||||  |  |||||| |||||||||||||| ||||||    
T  42639224 aatccataagtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgc 42639296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 51252665 - 51252747
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||| | |||||| | ||||||| ||| ||||||||||  || |||||| |||||||||||||| |||||||||| |||||    
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaact 51252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 562
Target Start/End: Complemental strand, 31459089 - 31459032
Alignment:
Q  506 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  31459089 tacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 31459032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 568
Target Start/End: Complemental strand, 41192921 - 41192832
Alignment:
Q  480 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||| |||| | |||||||| | |||||||  |||| ||||||||| || |||||| |||||||||||||  |||||||||| |||||    
T  41192921 actacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaact 41192832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 55768724 - 55768781
Alignment:
Q  506 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55768724 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55768781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 55832980 - 55833037
Alignment:
Q  506 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55832980 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 3274055 - 3274011
Alignment:
Q  245 tgttggaaaaaataggaaagagaaattacaaaataacaacaacaa 289  Q
    ||||||||||| ||||||||||||||||||| | | |||||||||    
T  3274055 tgttggaaaaattaggaaagagaaattacaacacatcaacaacaa 3274011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 42285897 - 42285969
Alignment:
Q  480 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 551  Q
    |||||| |||||| |||||||| |  |||||| ||||||||||||||| || |||| | ||||||||||||||    
T  42285897 actacagaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctacta 42285969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 49987487 - 49987435
Alignment:
Q  506 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtg 557  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||||| |||||    
T  49987487 tacatgaccaaaccacctaagcctattttccaccatcttttctactataggtg 49987435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 568
Target Start/End: Complemental strand, 2544716 - 2544595
Alignment:
Q  449 tttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttc 546  Q
    ||||| |||||| ||| |||||||| ||||| |||| | |||| |||||||||| | ||||||||||||||||||||||| | ||||||| |||||||||    
T  2544716 tttgactatcctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttc 2544617  T
Q  547 tactaaaggtgctaccacaact 568  Q
    ||||| |||||||||| |||||    
T  2544616 tactataggtgctaccccaact 2544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 595
Target Start/End: Original strand, 35828721 - 35828863
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa-gttattttccatcatcttttctactaa 552  Q
    |||||| ||| |||||| | ||||| ||||||||||| |||||||||| | ||||| |||||||||||||||   ||||||||| |||||||||||| |     
T  35828721 tatcctccatatgatcttctctccttactacataatctataggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccat 35828820  T
Q  553 aggtgctaccacaactttcttattaatattttcatttctaatc 595  Q
    |||||||||   |||| |||   ||||||| ||||||||||||    
T  35828821 aggtgctactcaaactctctctctaatattgtcatttctaatc 35828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 27848016 - 27848091
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||| | || |||| |||||||||||||| |||||||| | |||||||||||| | ||||||||||||||||    
T  27848016 aggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaact 27848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 568
Target Start/End: Complemental strand, 43423805 - 43423715
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||||||| | | |||||| | ||||||| ||||||||||||||  || |||||| |||||||||||||| ||||| |||| |||||    
T  43423805 tactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaact 43423715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 561
Target Start/End: Original strand, 36339974 - 36340082
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctactaa 552  Q
    |||||| ||| ||||| |||| ||| |||||| |||| |||||||||| | || |||||| ||||||||| ||  ||||||||| ||||||||||| ||     
T  36339974 tatcctccatctgatcaacccgccttactacaaaatctataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatat 36340073  T
Q  553 aggtgctac 561  Q
    |||||||||    
T  36340074 aggtgctac 36340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 562
Target Start/End: Original strand, 48431602 - 48431686
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| |||| | | |||||| | ||||||| ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  48431602 tactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 10569231 - 10569310
Alignment:
Q  448 atttgattatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag 526  Q
    ||||||||| ||| ||| | ||||||||||| ||||||| |||| | |||||||| | ||||||| ||||||||||||||    
T  10569231 atttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaaccacctaag 10569310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 593
Target Start/End: Original strand, 19908235 - 19908350
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttatta 577  Q
    |||||||||||| | |||| ||| | ||||||| ||||| |||||||  ||  |||||  |||||||| ||||| |||||||||||||||| |||  |||    
T  19908235 tactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggtgctaccacaactctctcttta 19908334  T
Q  578 atattttcatttctaa 593  Q
    || || ||||||||||    
T  19908335 attttgtcatttctaa 19908350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 568
Target Start/End: Complemental strand, 1661508 - 1661426
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||| |||||||||| | |||||||  ||||||| || ||  ||||||||| |||||||||||||| |||||||||| |||||    
T  1661508 aatctataggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaact 1661426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 52561843 - 52561897
Alignment:
Q  515 aaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||||| |||||    
T  52561843 aaaccacctaagcctattttctatcatcatttctactaaaggtgctaccccaact 52561897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 567
Target Start/End: Original strand, 8343062 - 8343143
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 567  Q
    |||||| |||||||| | ||||||| |||  |||||||||  || |||||| |||||||||||||||||||| |||| ||||    
T  8343062 aatccacaggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaac 8343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 9509388 - 9509283
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaa 593  Q
    ||||||| | ||||||| |||||| |||||||  ||||||  | |||||||||||||| |||||||||| ||||| |||   ||||  | ||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T
Q  594 tcatat 599  Q
    ||||||    
T  9509288 tcatat 9509283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 562
Target Start/End: Original strand, 32404737 - 32404806
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| | |||||| |||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  32404737 aggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc 32404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 561
Target Start/End: Complemental strand, 5338795 - 5338727
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctac 561  Q
    |||||||| | || |||| |||||||||||||| | | |||||| |||||||||||||| |||||||||    
T  5338795 aggtcttctctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtgctac 5338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 15086004 - 15085936
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  15086004 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 15085936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 561
Target Start/End: Complemental strand, 40416482 - 40416374
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 552  Q
    |||||| ||| |||||||| ||||| |||||| |||| | || ||||| | ||||||| | ||||||||||||  |  |||||| ||||||||||||||     
T  40416482 tatcctgcatctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactat 40416383  T
Q  553 aggtgctac 561  Q
    |||||||||    
T  40416382 aggtgctac 40416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 455 - 568
Target Start/End: Original strand, 43752118 - 43752233
Alignment:
Q  455 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 552  Q
    |||||| ||| |||||||| |||| |||||||||||| |||||||||| | ||||||||||||| ||||||||  ||||||| | || |||||||||||     
T  43752118 tatcctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactat 43752217  T
Q  553 aggtgctaccacaact 568  Q
    |||||||||| |||||    
T  43752218 aggtgctaccccaact 43752233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 551
Target Start/End: Original strand, 9578914 - 9578972
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 551  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  9578914 aggtcttctctctacatgtccaaaccacctaagtctattttacatcatctttactacta 9578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 23714439 - 23714541
Alignment:
Q  462 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 559  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  23714439 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 23714538  T
Q  560 acc 562  Q
    |||    
T  23714539 acc 23714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 24102111 - 24102213
Alignment:
Q  462 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 559  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  24102111 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 24102210  T
Q  560 acc 562  Q
    |||    
T  24102211 acc 24102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 526
Target Start/End: Complemental strand, 3481252 - 3481180
Alignment:
Q  455 tatccttcatttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag 526  Q
    |||||| ||| |||||||| |||||  ||||| |||| |||||||||| | ||||||||||||||||||||||    
T  3481252 tatcctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 18958959 - 18958903
Alignment:
Q  513 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 45367837 - 45367905
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  45367837 ggtcttctctctacatgtccaaaccatctaaggttattttctaccaacttttctactataggtgctacc 45367905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 8180857 - 8180782
Alignment:
Q  488 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||| |||||||| | ||||||| |||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  8180857 atccacaggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 8180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 568
Target Start/End: Complemental strand, 12141663 - 12141540
Alignment:
Q  447 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttt 544  Q
    ||||||| ||||||  || |||||||| ||||| |||| | |||| | ||||||||   |||| || ||||||||||||||  | ||||||| |||||||    
T  12141663 aatttgactatcctcaatctgatctactctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttt 12141564  T
Q  545 tctactaaaggtgctaccacaact 568  Q
    ||||||| |||||||||| |||||    
T  12141563 tctactataggtgctaccccaact 12141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 25834758 - 25834683
Alignment:
Q  488 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||| |||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  25834758 atccacaggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 25834683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 42543339 - 42543272
Alignment:
Q  462 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagtt 528  Q
    |||||||||||| |||||| ||||| |||||| |||||||| |  |||||| ||||||||||||||||    
T  42543339 catttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaaccacctaagtt 42543272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 595
Target Start/End: Complemental strand, 11017339 - 11017285
Alignment:
Q  539 atcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 595  Q
    ||||||||||||| |||||||||| ||||| |||  |||||||||||||| ||||||    
T  11017339 atcttttctactataggtgctacctcaactctct--ttaatattttcattcctaatc 11017285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 562
Target Start/End: Complemental strand, 19024239 - 19024182
Alignment:
Q  506 tacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| | || ||||||||||    
T  19024239 tacatgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacc 19024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 568
Target Start/End: Complemental strand, 6219027 - 6218963
Alignment:
Q  505 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||||||||||||  |||| ||||  ||||||||||||| | |||||||| |||||    
T  6219027 ctacatgtccaaaccacctaagcctattatccactatcttttctactataagtgctaccccaact 6218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 599
Target Start/End: Original strand, 9556582 - 9556685
Alignment:
Q  496 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 594  Q
    |||||| | ||||||| | ||||||||||||  ||||||||| ||| |||||||||| | ||| |||| |||||||||   |||| || |||||||||||    
T  9556582 gtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaat 9556680  T
Q  595 catat 599  Q
    |||||    
T  9556681 catat 9556685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 11992320 - 11992388
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | ||| |||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  11992320 ggtcttctctctatatgtccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 11992388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 568
Target Start/End: Complemental strand, 41330189 - 41330125
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||| ||||||| |||||  ||||||  |||||||||||||||||||||| |||| |||||    
T  41330189 ctacatgttcaaaccatctaagcctatttttgatcatcttttctactaaaggtgttacctcaact 41330125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 568
Target Start/End: Original strand, 14389339 - 14389453
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 553  Q
    |||||| ||| |||||||  ||||| |||||| | || |||||||||| | ||||||||||||||||||||||||  |||||| |||||||||||| | |    
T  14389339 tatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagtttgtttccaccatcttttctacgata 14389438  T
Q  554 ggtgctaccacaact 568  Q
    ||||||||| |||||    
T  14389439 ggtgctacctcaact 14389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 373 - 568
Target Start/End: Original strand, 9593797 - 9593992
Alignment:
Q  373 tccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatcta--tcttgaagaatttgattatccttcatttgatc 470  Q
    ||||||||| ||| |||| |||  ||||||||||||||||||| ||  ||||||| ||||| ||||  ||||||    ||||| | |||| ||| |||||    
T  9593797 tccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttcctctacctcttga----tttgactctcctccatctgatc 9593892  T
Q  471 taccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||| || || ||||||  ||| | | |||||| | ||||||| ||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||    
T  9593893 tactcttcttactacagcatctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaact 9593992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 608228 - 608159
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| | |||||||||||||||| |||||  ||||||| |||| ||||||||||| ||||| ||||    
T  608228 aggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgatacc 608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 12645266 - 12645343
Alignment:
Q  85 atacttatcggagaggagatcaacccataatttattagaatattgaaacatatcccaaactagcttctcaaggagaca 162  Q
    |||||| || || |||||||||||||||||||| || ||  |||| |  ||||||||||||||||||  |||||||||    
T  12645266 atacttgtcagaaaggagatcaacccataattttttggagcattggacaatatcccaaactagcttccaaaggagaca 12645343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 594
Target Start/End: Complemental strand, 33084129 - 33084028
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttcta 592  Q
    |||||||| | ||||||  ||||||||||||||| || |||| | |||||||||||| | |||||||||| ||||| |||   ||||||  |||||||||    
T  33084129 aggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttcta 33084030  T
Q  593 at 594  Q
    ||    
T  33084029 at 33084028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 5258360 - 5258428
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  5258360 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 5258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 556
Target Start/End: Complemental strand, 24665918 - 24665818
Alignment:
Q  459 cttcatttgatctaccctcct-actacataa-tccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaagg 555  Q
    |||||| |||||||| ||||| |||||| || || | |||||||| | ||||||||||||||||||||||  ||||||| | ||| |||||||||| |||    
T  24665918 cttcatctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactatagg 24665819  T
Q  556 t 556  Q
    |    
T  24665818 t 24665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 568
Target Start/End: Complemental strand, 79623 - 79509
Alignment:
Q  456 atccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaa 553  Q
    ||||| ||||||||| || ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| | | ||||||| |||||||||||||| |    
T  79623 atcctccatttgatcgactctccttactacagaatctataggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactata 79524  T
Q  554 ggtgctaccacaact 568  Q
    ||| ||||| |||||    
T  79523 ggtactaccccaact 79509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 568
Target Start/End: Complemental strand, 33667297 - 33667212
Alignment:
Q  484 cataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||| |||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaact 33667212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 495 - 572
Target Start/End: Original strand, 31636132 - 31636210
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 572  Q
    ||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||||||    
T  31636132 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttct 31636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 599
Target Start/End: Complemental strand, 6889075 - 6888958
Alignment:
Q  483 acataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatat 581  Q
    |||||||||| | |||||| | ||||||||||||||||| ||||  ||||||||| |||||||||  ||| | |||||||| ||||| | |   ||||||    
T  6889075 acataatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatat 6888976  T
Q  582 tttcatttctaatcatat 599  Q
    | ||||||||||||||||    
T  6888975 tgtcatttctaatcatat 6888958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 568
Target Start/End: Complemental strand, 14667815 - 14667759
Alignment:
Q  513 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  14667815 ccaaaccacctaagtctattttccaccatcttttctactataggtgctaccccaact 14667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 27944 - 27895
Alignment:
Q  514 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  27944 caaaccacctaagcctattttccatcatcttttctactataggtgctacc 27895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 599
Target Start/End: Complemental strand, 6859467 - 6859346
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 577  Q
    ||||||| |||||| | |||||| | |||| ||||||||||||||| |  | ||||||| |||||| |  |||| |||||||||| ||||| |||   ||    
T  6859467 tactacagaatccacaagtcttctctctacgtgtccaaaccacctatgcctgttttccaccatcttcttcactataggtgctaccccaactctctgtcta 6859368  T
Q  578 atattttcatttctaatcatat 599  Q
    ||||| ||||||||||||||||    
T  6859367 atattgtcatttctaatcatat 6859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 595
Target Start/End: Complemental strand, 14749385 - 14749276
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 585  Q
    |||||| |||||||| | |||||||||||||||| |||||| || |||| | ||  |||||||||| |||||||||  ||||| |||   |||| |||||    
T  14749385 aatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttc 14749286  T
Q  586 atttctaatc 595  Q
    ||||||||||    
T  14749285 atttctaatc 14749276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 552
Target Start/End: Complemental strand, 42199386 - 42199298
Alignment:
Q  466 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 552  Q
    |||||||| ||||| |||||| |||| | | |||||| | ||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctactaa 42199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 24872993 - 24872946
Alignment:
Q  103 atcaacccataatttattagaatattgaaacatatcccaaactagctt 150  Q
    ||||||||||||||| || |||||||||| |||||||||||| |||||    
T  24872993 atcaacccataatttctttgaatattgaaccatatcccaaacaagctt 24872946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 594
Target Start/End: Complemental strand, 37124603 - 37124539
Alignment:
Q  528 tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 594  Q
    ||||||||||||||||||| |||| |||||||||| | ||| |||  ||||| ||||||||||||||    
T  37124603 tattttccatcatcttttcaactataggtgctaccccgactctct--ttaattttttcatttctaat 37124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 568
Target Start/End: Complemental strand, 2713062 - 2712940
Alignment:
Q  448 atttgattatccttcatttgatctaccctcctac-tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatctttt 545  Q
    |||||| | |||| ||| |||||||| ||||| | |||| |||||| |||||||| | ||||||| ||||||||||||||| || | || | ||||||||    
T  2713062 atttgactctcctccatctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatctttt 2712963  T
Q  546 ctactaaaggtgctaccacaact 568  Q
      |||| |||||||||| |||||    
T  2712962 agactataggtgctaccccaact 2712940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 562
Target Start/End: Complemental strand, 28676666 - 28676597
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| | ||||||| | ||||||||||||  ||||||||| |||||||||||||| || |||||||    
T  28676666 aggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactatagctgctacc 28676597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 14665784 - 14665716
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| |||| ||| ||||||| ||||||||||    
T  14665784 ggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttctctactataggtgctacc 14665716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 562
Target Start/End: Complemental strand, 15168850 - 15168794
Alignment:
Q  507 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||||||||||||| ||  ||||||| | |||||||||||||| ||||||||||    
T  15168850 acatgtccaaaccaccttagcctattttctaccatcttttctactataggtgctacc 15168794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 16347590 - 16347658
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  16347590 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 16347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 38685037 - 38684969
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  38685037 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 38684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 595
Target Start/End: Original strand, 54365199 - 54365287
Alignment:
Q  505 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 595  Q
    ||||||| |||||||||||||| ||||||||  ||| |||||||||| |||||||||| ||||| |||   ||||||||||||||||||||    
T  54365199 ctacatgcccaaaccacctaagctattttccgccatattttctactataggtgctaccccaactctct--ctaatattttcatttctaatc 54365287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 568
Target Start/End: Original strand, 36820140 - 36820247
Alignment:
Q  463 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgcta 560  Q
    ||||||||||||||||| ||||||||||| || ||||||| |  |||||||| ||||||||||||  || |||||| ||||||| ||| || ||||||||    
T  36820140 atttgatctaccctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgcta 36820239  T
Q  561 ccacaact 568  Q
    || |||||    
T  36820240 ccccaact 36820247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 568
Target Start/End: Original strand, 50960841 - 50960919
Alignment:
Q  491 cataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  50960841 cataggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaact 50960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 568
Target Start/End: Complemental strand, 26490375 - 26490311
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  26490375 ctacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaact 26490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 560
Target Start/End: Original strand, 42510187 - 42510292
Alignment:
Q  455 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 552  Q
    |||||| ||| |||||||| ||||| || ||| |||| |||||||||| |  |||||||||||||||||||||  |||||||||  |||||||||||||     
T  42510187 tatcctccatctgatctactctccttaccacaaaatctataggtcttctc--tacatgtccaaaccacctaagcctattttccactatcttttctactat 42510284  T
Q  553 aggtgcta 560  Q
    ||||||||    
T  42510285 aggtgcta 42510292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 568
Target Start/End: Original strand, 44134056 - 44134116
Alignment:
Q  509 atgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||    
T  44134056 atgtccaaaccacctaagtctattttccaccatcttttctactagaggcgctaccccaact 44134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 27917630 - 27917562
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 572  Q
    |||||||||||||||| |||||  ||||| | | |||||||||||||| |||||||||| |||||||||    
T  27917630 ctacatgtccaaaccatctaagcctatttcctaccatcttttctactataggtgctaccccaactttct 27917562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 595
Target Start/End: Original strand, 39600770 - 39600994
Alignment:
Q  373 tccaactcactaacctcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttcatttgatcta 472  Q
    ||||||||| |||||||| | |  ||| ||||||||||||||| |   ||||||| ||||| |||| ||     ||| ||| ||||||  || |||||||    
T  39600770 tccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta 39600869  T
Q  473 ccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaacttt 570  Q
    | |||||  ||||| |||| | |||||||| |  |||||| | |||||||||||| || ||||||| |||||||||||||| |||| ||||| ||||| |    
T  39600870 ctctcctcgctacagaatctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactct 39600969  T
Q  571 cttattaatattttcatttctaatc 595  Q
    ||   |||| || ||||||||||||    
T  39600970 ctctctaatgttgtcatttctaatc 39600994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 49503766 - 49503834
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 49503834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 567
Target Start/End: Complemental strand, 54128438 - 54128375
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 567  Q
    ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| ||||    
T  54128438 ctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaac 54128375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 567
Target Start/End: Original strand, 2340911 - 2340999
Alignment:
Q  480 actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctaccacaac 567  Q
    ||||||||||| |||| ||||  | |||||||  |||||||| |||| | |||||||| |||||||||||| || ||||||||| ||||    
T  2340911 actacataatctatagatcttttctctacatgctcaaaccacgtaagatgattttccaccatcttttctacgaatggtgctaccccaac 2340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 551
Target Start/End: Complemental strand, 21200617 - 21200561
Alignment:
Q  496 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 551  Q
    |||||| | ||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  21200617 gtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctacta 21200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 568
Target Start/End: Original strand, 34719254 - 34719358
Alignment:
Q  466 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctacca 563  Q
    |||||||| ||||| |||||| |||| | ||| |||| | ||| |||| |||| |||||||||| | |||||| |||||||||||| | ||||||||||     
T  34719254 tgatctactctccttactacaaaatcaacaggccttctctctatatgttcaaaacacctaagttgactttccaccatcttttctacgataggtgctaccc 34719353  T
Q  564 caact 568  Q
    |||||    
T  34719354 caact 34719358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 47233808 - 47233876
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  47233808 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 47233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 36143476 - 36143367
Alignment:
Q  455 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 552  Q
    |||||| |||||||||||| |||| ||||||| |||| |||||||||  | ||| ||| ||||||||||||||| ||||||||| ||||| |||| |||     
T  36143476 tatcctccatttgatctactctccatactacagaatctataggtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctat 36143377  T
Q  553 aggtgctacc 562  Q
    ||||||||||    
T  36143376 aggtgctacc 36143367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 513 - 593
Target Start/End: Original strand, 45512725 - 45512808
Alignment:
Q  513 ccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact--ttcttattaatattttcatttctaa 593  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||   |||  |||||||||||||||||||    
T  45512725 ccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctctttaatattttcatttctaa 45512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 595
Target Start/End: Original strand, 44681243 - 44681352
Alignment:
Q  487 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 585  Q
    |||| |||||||||| | ||| || ||||||||  ||||| |||||||||| ||||||||||| || |||||||||||||||| |||   |||| || ||    
T  44681243 aatctataggtcttctctctagatttccaaaccttctaagcttattttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtc 44681342  T
Q  586 atttctaatc 595  Q
    ||||||||||    
T  44681343 atttctaatc 44681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 43904828 - 43904947
Alignment:
Q  447 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag----ttattttccatcatc 541  Q
    ||||||| |||||| ||| |||||||  || || ||||||  ||| |||||||||| | ||||||||||||||||||||||    |||||||||  ||||    
T  43904828 aatttgactatcctccatctgatctattcttcttactacaacatctataggtcttctctctacatgtccaaaccacctaagcttattattttcctccatc 43904927  T
Q  542 ttttctactaaaggtgctac 561  Q
    |||||||||| || ||||||    
T  43904928 ttttctactatagatgctac 43904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 595
Target Start/End: Complemental strand, 44373879 - 44373745
Alignment:
Q  463 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 560  Q
    ||||||||||| ||| | |||||| |||| ||||||||| || |||||||  ||||||||  |||  ||||||||| |||||||||||||  ||||||||    
T  44373879 atttgatctactctctttactacaaaatctataggtctttactctacatgctcaaaccactcaagcctattttccaccatcttttctactttaggtgcta 44373780  T
Q  561 ccacaactttcttattaatattttcatttctaatc 595  Q
    |  ||||| ||    ||||||||||||||||||||    
T  44373779 ctccaactctcactctaatattttcatttctaatc 44373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 18752098 - 18752155
Alignment:
Q  505 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||||||||||| ||||| ||||||| | || ||||||||||| ||||||||||    
T  18752098 ctacatgtccaaaccatctaagctattttctaccaacttttctactataggtgctacc 18752155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 599
Target Start/End: Complemental strand, 33511407 - 33511325
Alignment:
Q  514 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatat 599  Q
    |||||||||||||| |||||| |||||| |||||||| | ||||| |||| ||||| |||    |||||||||||||||||||||||    
T  33511407 caaaccacctaagtctatttttcatcattttttctaccataggtgttaccccaactctct----aatattttcatttctaatcatat 33511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 568
Target Start/End: Original strand, 41444548 - 41444612
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| |||||||||| |||||    
T  41444548 ctacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 595
Target Start/End: Original strand, 13171879 - 13171962
Alignment:
Q  513 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 595  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||| || ||||| |||   |||| || ||||||||||||    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaatc 13171962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 41971991 - 41972046
Alignment:
Q  496 gtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctact 550  Q
    |||||| | ||||||||||||||||||| || |||||||||| |||||||||||||    
T  41971991 gtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctact 41972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 45419297 - 45419239
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| ||||||||||||||| ||||||  | |||||||||||||| ||||||||||    
T  45419297 ctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctacc 45419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 599
Target Start/End: Original strand, 10824335 - 10824477
Alignment:
Q  455 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 552  Q
    |||||| |||||||||||| |||| ||||||| |||| ||  |||||  | ||| ||  ||||||||||||||  ||||||| | |||||||||||||      
T  10824335 tatcctccatttgatctactctccatactacaaaatctatgagtcttttctctaaatacccaaaccacctaagcctattttcgaccatcttttctacttt 10824434  T
Q  553 aggtgctaccacaactttcttattaatattttcatttctaatcatat 599  Q
    ||||||| || ||||| |||    |||||||| ||||||||||||||    
T  10824435 aggtgctgcctcaactctct----aatatttttatttctaatcatat 10824477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 594
Target Start/End: Complemental strand, 32043676 - 32043560
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 577  Q
    |||||||  ||||| |||||||| | ||||||| |||||||||| |||| || |||| | |||||||| ||||| ||||| |||| ||||| |||   ||    
T  32043676 tactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgataccccaactctctctcta 32043577  T
Q  578 atattttcatttctaat 594  Q
    || || |||||||||||    
T  32043576 atgttgtcatttctaat 32043560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 551
Target Start/End: Original strand, 35643814 - 35643870
Alignment:
Q  496 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 551  Q
    |||||| | ||||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  35643814 gtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctacta 35643870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 525
Target Start/End: Original strand, 39953438 - 39953506
Alignment:
Q  458 ccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa 525  Q
    ||||||| |||||||| ||||| |||||||||||||||||||  | | ||||||| | |||||||||||    
T  39953438 ccttcatctgatctactctccttactacataatccataggtcacctctctacatgcctaaaccacctaa 39953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 462 - 568
Target Start/End: Original strand, 48736077 - 48736185
Alignment:
Q  462 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 559  Q
    |||||||||||| |||||| |||||||||||| |||||||| | |||||||  |||||||||||||| || ||||   |||||||||||||  |||||||    
T  48736077 catttgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttctcccatcttttctactgtaggtgct 48736176  T
Q  560 accacaact 568  Q
    ||| |||||    
T  48736177 accccaact 48736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 466 - 568
Target Start/End: Original strand, 36514389 - 36514493
Alignment:
Q  466 tgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 563  Q
    |||||||| |||| ||||||| |||||| | ||| || | ||||||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||     
T  36514389 tgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccc 36514488  T
Q  564 caact 568  Q
    |||||    
T  36514489 caact 36514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 562
Target Start/End: Original strand, 36101964 - 36102045
Alignment:
Q  482 tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||| |||| |||||||||| | ||||||  ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  36101964 tacaaaatctataggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttctattataggtgctacc 36102045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 568
Target Start/End: Original strand, 7189448 - 7189512
Alignment:
Q  505 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||| |||||||||||||| |||||||| | |||||||||||||| |||||| ||| |||||    
T  7189448 ctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgcgaccccaact 7189512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 42187556 - 42187472
Alignment:
Q  479 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||||||| | ||| |||| |  |||||| ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  42187556 tactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctacc 42187472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 26742118 - 26742176
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    |||||||| ||||||||||||   ||||||||| |||||||||||||| ||||||||||    
T  26742118 ctacatgttcaaaccacctaatcctattttccaccatcttttctactataggtgctacc 26742176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 40169709 - 40169651
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| ||||||||||||||  ||||||||| |||||||||||||| | ||||||||    
T  40169709 ctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctacc 40169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 568
Target Start/End: Complemental strand, 47848732 - 47848670
Alignment:
Q  507 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||||| ||| |||||| |||||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaact 47848670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 16013371 - 16013326
Alignment:
Q  482 tacataatccataggtcttcacactacatgtccaaaccacctaagt 527  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  16013371 tacataatccacaggtcttctcactacatgcccaaatcacctaagt 16013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 12966129 - 12966025
Alignment:
Q  459 cttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggt 556  Q
    ||||| ||||||||| ||||| |||||| |||  |  ||||||| | ||||||| ||||||||||||||  || |||||| |||||||||| ||| ||||    
T  12966129 cttcacttgatctactctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggt 12966030  T
Q  557 gctac 561  Q
    |||||    
T  12966029 gctac 12966025  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 568
Target Start/End: Original strand, 27893770 - 27893834
Alignment:
Q  505 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||| |||||||||||||  ||||||||| ||||| |||||||| ||||| |||| |||||    
T  27893770 ctacatgttcaaaccacctaagcctattttccaccatctattctactataggtgttacctcaact 27893834  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 568
Target Start/End: Complemental strand, 38920854 - 38920790
Alignment:
Q  505 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    ||||||| ||||||||| ||||  || |||||| |||||||||||||| |||||||||| |||||    
T  38920854 ctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaact 38920790  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Complemental strand, 43281744 - 43281676
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  43281744 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 43281676  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 45836692 - 45836760
Alignment:
Q  495 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 562  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  45836692 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 45836760  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 551
Target Start/End: Complemental strand, 47236274 - 47236238
Alignment:
Q  516 aaccacctaagt-tattttccatcatcttttctacta 551  Q
    |||||||||||| ||||||||||||||||||||||||    
T  47236274 aaccacctaagtctattttccatcatcttttctacta 47236238  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 44079 - 44154
Alignment:
Q  494 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 568  Q
    |||||||| | ||||||| ||||||||||||||  ||||||||  |||||||||||||| |||||||||| |||||    
T  44079 aggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaact 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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