View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_5 (Length: 456)
Name: NF19692_low_5
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 43367536 - 43367961
Alignment:
| Q |
18 |
tacaggagccagcagaccgaataaagcggctactacactacgcagagctaacaccaccgatggaggagacagcgcgtgttgacaggaaccgagtcatggg |
117 |
Q |
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| T |
43367536 |
tacaggagccagcagaccgaatgaagcggctactacactacgcagagctaacaccaccgatggaggagacagcgcgtgttgacaggaaccgagtcatggg |
43367635 |
T |
|
| Q |
118 |
gtgtacggctagagtgtgggtggaggtgaagatcgacggtgaagggaaggtgagattaacggcagatagtgattcggagatcacgaaaggtttttgtgcg |
217 |
Q |
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| T |
43367636 |
gtgtacggctagagtgtgggtggaggtgaagatcgacggtgaagggaaggtgagattaacggcggatagtgattcggagatcacgaaaggtttttgtgcg |
43367735 |
T |
|
| Q |
218 |
tgtttggtttcggtgcttgatgggttggaaccggaagaggttgtgaaagtgagtactgaggatttggttggtcttaatgttggtttactaggaactggtc |
317 |
Q |
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| T |
43367736 |
tgtttggtttgggtgcttgatgggttggaaccggaagaggttgtgaaagtgagtactgaggatttggttggtcttaatgttggtttaccaggaactggtc |
43367835 |
T |
|
| Q |
318 |
gttctagggtgaatacgtggcataatgttcttgttactatgcnnnnnnngacgaaacaattggttgctgagagagaagggaaggtgaactttgagccttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
43367836 |
gttctagggtgaatacgtggcataatgttcttgttactatgcaaaaaaagacgaaacaattggttgctgagagagaagggaagctgaagtttgagccttt |
43367935 |
T |
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| Q |
418 |
tccgtctttgattgttaccgatgatg |
443 |
Q |
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| T |
43367936 |
tccgtctttgattgttactgatgatg |
43367961 |
T |
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