View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19692_low_6 (Length: 410)
Name: NF19692_low_6
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 40673486 - 40673095
Alignment:
| Q |
19 |
gatgtaatttcctaatcttcatcacattaatacattatctacctaattgagcaacattaaagtaatcaagttcagtgttcactaatgtttacattacatt |
118 |
Q |
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| T |
40673486 |
gatgtaatttcctaatcttcatcacattaatacattatccacctatttgagcaacattaaagtaatcaagttcagtgttcactaatgtttacattacatt |
40673387 |
T |
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| Q |
119 |
atattataaatagtagacaaaagaaaacaacgagttcacacacttactcaccagcactagcaaaacaatgtcttcccgtagccaattcttcgcgggtgtt |
218 |
Q |
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| T |
40673386 |
atattataaatagtagacaaaagaaaacaacgagttcacacacttactcaccagcactagcaaaacaatgtcttcccgtagccaattcttcgcgggtgtt |
40673287 |
T |
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| Q |
219 |
ataatcttgatagctgccttcattggcagcttattccttagtttattcatcatcagtcttgatagagaattcccaagtttccgagtcgagtcggcatcac |
318 |
Q |
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| T |
40673286 |
ataatcttgatagctgccttcattggcagcttattccttagtttattcatcatcagtcttgatagagaattcccaagtttccgagtcgagtcggcatcac |
40673187 |
T |
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| Q |
319 |
tcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaacataacactctcagtctccgacccaaaccagtatctaagtgtc |
410 |
Q |
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| T |
40673186 |
tcaaccaactaaccataaatggcaccgagaaaatgagtgcctcattgaacataacactctcagtctccgacccaaaccagtatctaagtgtc |
40673095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 40683774 - 40683687
Alignment:
| Q |
40 |
tcacattaatacattatctacctaattgagcaacattaaagtaa-----tcaagttcagtgttcactaatgtttacattacattatat |
122 |
Q |
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| T |
40683774 |
tcacattactagattatctacctaggtgagcaacattaaattaaattaatcgtgttcagtgttcaccaatatttacattacattatat |
40683687 |
T |
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