View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19692_low_8 (Length: 362)
Name: NF19692_low_8
Description: NF19692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19692_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 11000144 - 10999810
Alignment:
| Q |
15 |
tatattgcaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataa |
114 |
Q |
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| T |
11000144 |
tatattgtaatcatcaaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataa |
11000045 |
T |
|
| Q |
115 |
ttagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11000044 |
ttagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaa |
10999945 |
T |
|
| Q |
215 |
tcaattggtcgttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacacc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10999944 |
tcaattggtcgttgtcctcacatgataagatgtacctattgtcaccacagttttcgggactgtctttcaatcggaaagggtggcttatgttatggacacc |
10999845 |
T |
|
| Q |
315 |
acaccttttagagcatgactcttgttgttcatctc |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
10999844 |
acaccttttagagcatgactcttgttgttcatctc |
10999810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 11003107 - 11002787
Alignment:
| Q |
29 |
caaacactgtatatggcaagactcttggattgatggtcgttgaagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaag |
128 |
Q |
| |
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|||||||| ||||||||||| || |||||||||||||| ||||| |||| |||| |||||||||||||||||| |||||||||||||||||| |||| | |
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| T |
11003107 |
caaacactctatatggcaaggctattggattgatggtccttgaatcgaaactatagaagcctagtggatgaggtgggagggaataattagagtaaccatg |
11003008 |
T |
|
| Q |
129 |
attattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttg |
228 |
Q |
| |
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| ||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11003007 |
actattgaaatccaatagacgtatagtgaagttattgtaattaattgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggttgttg |
11002908 |
T |
|
| Q |
229 |
tcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttttagagc |
328 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |
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| T |
11002907 |
tcctcacatgataagatgtaccttttgtcaccacagttttcgggactgtctttcaatcggaaagggtggcttatgttatggtcaccgcaccttgtagagc |
11002808 |
T |
|
| Q |
329 |
atgactcttgttgttcatctc |
349 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
11002807 |
atgaatcttgttgttcatctc |
11002787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 126 - 347
Target Start/End: Original strand, 10988373 - 10988594
Alignment:
| Q |
126 |
aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcg |
225 |
Q |
| |
|
|||| ||||||||| | ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
10988373 |
aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattg |
10988472 |
T |
|
| Q |
226 |
ttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttttag |
325 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||| | | |
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|
| T |
10988473 |
ttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaacaccgcaccttcttg |
10988572 |
T |
|
| Q |
326 |
agcatgactcttgttgttcatc |
347 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
10988573 |
aacatgactcttgttgttcatc |
10988594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 126 - 347
Target Start/End: Original strand, 11019541 - 11019762
Alignment:
| Q |
126 |
aagattattgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcg |
225 |
Q |
| |
|
|||| ||||||||| | ||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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|
| T |
11019541 |
aagaatattgaaatacgatagttggatggtaaagttgttgtaattaattgattgtacatagtattttccaaatgaaccatggtacaaaatcaattgattg |
11019640 |
T |
|
| Q |
226 |
ttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttttag |
325 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||| | | |
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| T |
11019641 |
ttgtcctcacatgataggttgtacctattgtcaccacattttttgggactgtctttcaatcggaaagggtggctgatgttatgaacaccgcaccttcttg |
11019740 |
T |
|
| Q |
326 |
agcatgactcttgttgttcatc |
347 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
11019741 |
aacatgactcttgttgttcatc |
11019762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 132 - 345
Target Start/End: Original strand, 11009505 - 11009727
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaa-------tgaac--catagtacaaaatcaattgg |
222 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
11009505 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccatggtattcttcaaattcatagtacaaaatcaattgg |
11009604 |
T |
|
| Q |
223 |
tcgttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttt |
322 |
Q |
| |
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| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| |||||| |
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| T |
11009605 |
ttattgtcctcacatgataggatgtaccttttgtcaccacacttttcaggactgtctttcaatcggaaagggtggctgatgctatgaacaccgcaccttc |
11009704 |
T |
|
| Q |
323 |
tagagcatgactcttgttgttca |
345 |
Q |
| |
|
| || ||||||||||| |||||| |
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|
| T |
11009705 |
ttgaacatgactcttgatgttca |
11009727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 10905496 - 10905682
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcc |
231 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| |||||| ||||| |
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| T |
10905496 |
attgaaatccaatagccgtatggtgaaattgttgtaattaattgattgtacataatattttccaaatgatccatagttcaaaattaattggc---tgtcc |
10905592 |
T |
|
| Q |
232 |
tcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacacctt |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | || ||||||||| ||||| |||||||||||||| ||| |||||||||| |||||| |
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|
| T |
10905593 |
tcacatgataagatgtaccttttgtcaccacagtgtttgggactgtcattcaaccggaaagggtggctgatgctatggacaccgcacctt |
10905682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 11034918 - 11035133
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcc |
231 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||| |
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|
| T |
11034918 |
attgaaatccaatagtcgtatggtgaagttgttgtaattaattgattgtacatagtattttccaaatgaatcatggtacaaaatcaattgattgttgtcc |
11035017 |
T |
|
| Q |
232 |
tcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttttagagcatg |
331 |
Q |
| |
|
|||||||||| | ||||||| | ||| ||||| | || |||||||||||||| |||||||| || |||||||| ||||| |||| | ||| |||| |
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|
| T |
11035018 |
tcacatgataggttgtacctttcgtcgccacattctttaggactgtctttcaagcggaaaggagacctgatgttatgaacaccgcaccatcgagaacatg |
11035117 |
T |
|
| Q |
332 |
actcttgttgttcatc |
347 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
11035118 |
agtcttggtgttcatc |
11035133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 347
Target Start/End: Original strand, 10975550 - 10975772
Alignment:
| Q |
132 |
attgaaatccaataatcgtatggtaaagttgttgtaattaatcgattgtacatagtattttccaa---atgaacca------tagtacaaaatcaattgg |
222 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||| |||||||| ||||||||| |
|
|
| T |
10975550 |
attgaaatccaatagccgtatggtaaagttgttgtaattaattgattgtacataatattttccggtgtatttcccaactttatagtacaagatcaattgg |
10975649 |
T |
|
| Q |
223 |
tcgttgtcctcacatgataagatgtacctattgtcaccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttt |
322 |
Q |
| |
|
| ||||||||||||||||||||| ||||| ||||||| || | || |||||||||||||| |||||||||||||| |||||||||||||| || ||| |
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|
| T |
10975650 |
ttgttgtcctcacatgataagatatacctcttgtcac--cagtgtttgggactgtctttcagccggaaagggtggctgatgttatggacaccgcaacttc |
10975747 |
T |
|
| Q |
323 |
tagagcatgactcttgttgttcatc |
347 |
Q |
| |
|
||| |||||||| || |||||||| |
|
|
| T |
10975748 |
cagaacatgactcatggtgttcatc |
10975772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 347
Target Start/End: Original strand, 10921999 - 10922281
Alignment:
| Q |
71 |
aagtgaaattatacaagcctagtggatgaggttggagggaataattagagtgaccaagattattgaaatccaataatcgtatggtaaagttgttgtaatt |
170 |
Q |
| |
|
||||||||||||| | |||||||| ||| || |||||| | ||||||||| ||||| ||| || |||||||| |||||| || ||||||||||||| |
|
|
| T |
10921999 |
aagtgaaattatagaggcctagtgaatggggagggagggtaaaattagagtaaccaaaatt---gacatccaatagtcgtatagtgtagttgttgtaatt |
10922095 |
T |
|
| Q |
171 |
aatcgattgtacata------------gtattttccaaatgaaccatagtacaaaatcaattggtcgttgtcctcacatgataagatgtacctattgtca |
258 |
Q |
| |
|
||| ||||||||||| || |||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| || |||||| |
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|
| T |
10922096 |
aattgattgtacataaaatttaccatggttttttccaaatt---catagtacaaaatcaactggttgttgtcctcacatgataagatgtatcttttgtca |
10922192 |
T |
|
| Q |
259 |
ccacacttttcgggactgtctttcaatcggaaagggtggcttatgttatggacaccacaccttttagagcatgactcttgttgttcatc |
347 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || |||||||| ||||| |||| | ||| ||||||||||| |||||||| |
|
|
| T |
10922193 |
ccacactttttaggactgtctttcaagcggaaaggagacctgatgttatgaacaccgcaccatcgagaacatgactcttggtgttcatc |
10922281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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