View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19693_high_2 (Length: 388)
Name: NF19693_high_2
Description: NF19693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19693_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 33217713 - 33217355
Alignment:
| Q |
16 |
tgtacccctttacgaattaaattatttttaatagggagtctatcaataaacaatcttcaagcaaataatgatatcaacacaaaggggaatcggctattgc |
115 |
Q |
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| T |
33217713 |
tgtacccctttacgaattaaattatttttaatagagagtctatcaataaacgatcttcaagcaaacaataatattaacacaaaggggaatcggctattgc |
33217614 |
T |
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| Q |
116 |
tttaaattagatatcaacacataaacttctttgagtaaaaacacttcattgcaattaaggtcccaaatccattcatcctccaaattttcttaaaatgaaa |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33217613 |
tttaaattagatatcaacacataaatttctttgagtaaaaacacttcattgcaattaaggtcccaaatccattcatcctccaaattttcttaaaaagaaa |
33217514 |
T |
|
| Q |
216 |
tgttagatacaaccctagactcctccactaactctgcctcctaaacaaacaaaaaatttctccaactgctaaattaaacaacttactaaaaccttatttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||| |
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| T |
33217513 |
tgttagatacaaccctagactcctccactaactctgcctcctaaacaaacaaaaaaaaattccaactgctaaattaaacaacgtactaaaactttctttt |
33217414 |
T |
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| Q |
316 |
aatacatcctcactcaaccaagaattgtgtcaaaacaacatgttactaccgtactcaat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33217413 |
aatacatcctcactcaaccaagaattgtgtcaaaacaacatgttactaccttactcaat |
33217355 |
T |
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