View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19693_low_3 (Length: 368)

Name: NF19693_low_3
Description: NF19693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19693_low_3
NF19693_low_3
[»] chr2 (24 HSPs)
chr2 (1-353)||(40943766-40944119)
chr2 (228-324)||(33197327-33197425)
chr2 (227-321)||(31461325-31461421)
chr2 (227-324)||(11393453-11393552)
chr2 (227-324)||(11410114-11410213)
chr2 (227-324)||(32098395-32098497)
chr2 (226-324)||(3102577-3102677)
chr2 (232-310)||(11393747-11393827)
chr2 (232-310)||(11410408-11410488)
chr2 (226-266)||(17952787-17952827)
chr2 (227-271)||(40758962-40759006)
chr2 (95-142)||(5902508-5902555)
chr2 (227-285)||(38355142-38355201)
chr2 (56-142)||(40158782-40158869)
chr2 (68-141)||(40776028-40776102)
chr2 (56-133)||(42852621-42852699)
chr2 (228-276)||(25609729-25609778)
chr2 (58-138)||(41170678-41170759)
chr2 (93-133)||(17443565-17443605)
chr2 (227-263)||(19629246-19629282)
chr2 (227-263)||(19826147-19826183)
chr2 (226-284)||(28803592-28803652)
chr2 (227-267)||(29633015-29633055)
chr2 (226-284)||(37053518-37053578)
[»] scaffold0590 (1 HSPs)
scaffold0590 (226-323)||(1160-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (226-323)||(2716-2815)
[»] chr8 (25 HSPs)
chr8 (225-321)||(34563137-34563235)
chr8 (231-324)||(7026615-7026710)
chr8 (58-142)||(2487929-2488014)
chr8 (226-289)||(14949807-14949872)
chr8 (58-139)||(16162827-16162909)
chr8 (65-141)||(9541093-9541170)
chr8 (227-272)||(11000648-11000693)
chr8 (66-142)||(30191070-30191147)
chr8 (246-320)||(26716542-26716618)
chr8 (227-284)||(14482126-14482185)
chr8 (56-142)||(39551128-39551215)
chr8 (99-142)||(42370324-42370367)
chr8 (69-142)||(4251020-4251091)
chr8 (226-272)||(26820137-26820183)
chr8 (58-138)||(7714310-7714391)
chr8 (233-324)||(12972740-12972833)
chr8 (69-137)||(26499785-26499854)
chr8 (227-298)||(29699164-29699237)
chr8 (58-142)||(33553304-33553389)
chr8 (58-110)||(44236744-44236797)
chr8 (226-266)||(26215440-26215480)
chr8 (93-141)||(29169893-29169941)
chr8 (226-284)||(35534947-35535007)
chr8 (226-266)||(39392747-39392787)
chr8 (93-137)||(43908657-43908701)
[»] chr3 (35 HSPs)
chr3 (53-142)||(21872211-21872301)
chr3 (93-209)||(37273135-37273247)
chr3 (226-320)||(54775016-54775112)
chr3 (226-276)||(49587002-49587052)
chr3 (60-142)||(24624274-24624357)
chr3 (56-141)||(22667468-22667554)
chr3 (56-141)||(22724107-22724193)
chr3 (59-141)||(30668892-30668973)
chr3 (226-322)||(38462167-38462265)
chr3 (58-139)||(44014719-44014801)
chr3 (225-276)||(20192691-20192743)
chr3 (229-276)||(42039092-42039140)
chr3 (226-266)||(44284144-44284184)
chr3 (226-320)||(51278243-51278339)
chr3 (226-266)||(53457321-53457361)
chr3 (227-266)||(1395615-1395654)
chr3 (50-112)||(24158429-24158492)
chr3 (227-266)||(34318032-34318071)
chr3 (227-324)||(39971203-39971302)
chr3 (228-266)||(905058-905096)
chr3 (146-211)||(23785254-23785320)
chr3 (62-111)||(27795938-27795988)
chr3 (103-141)||(34254775-34254813)
chr3 (228-284)||(41028939-41028997)
chr3 (69-110)||(44237513-44237555)
chr3 (226-267)||(24887369-24887410)
chr3 (69-138)||(28881691-28881760)
chr3 (58-142)||(41164911-41164996)
chr3 (62-142)||(43115120-43115201)
chr3 (105-142)||(54837003-54837040)
chr3 (226-266)||(28306102-28306142)
chr3 (257-319)||(29094270-29094334)
chr3 (60-140)||(31365232-31365312)
chr3 (226-266)||(40122838-40122878)
chr3 (227-263)||(45535369-45535405)
[»] chr7 (27 HSPs)
chr7 (58-142)||(33894691-33894776)
chr7 (227-320)||(3501053-3501147)
chr7 (227-266)||(49060484-49060523)
chr7 (56-141)||(3836602-3836688)
chr7 (237-324)||(22388001-22388090)
chr7 (59-135)||(32410611-32410688)
chr7 (140-184)||(3468641-3468685)
chr7 (226-281)||(35808990-35809046)
chr7 (68-110)||(19624273-19624316)
chr7 (227-266)||(42656459-42656498)
chr7 (62-135)||(1710801-1710874)
chr7 (225-266)||(5715123-5715164)
chr7 (235-326)||(6552365-6552458)
chr7 (225-324)||(12242128-12242229)
chr7 (229-266)||(28178913-28178950)
chr7 (93-138)||(40009544-40009589)
chr7 (226-285)||(45593805-45593866)
chr7 (227-256)||(46281218-46281247)
chr7 (226-324)||(753290-753390)
chr7 (226-266)||(5006595-5006635)
chr7 (156-211)||(9038111-9038167)
chr7 (226-292)||(9527176-9527244)
chr7 (226-266)||(10079426-10079466)
chr7 (67-142)||(20547320-20547396)
chr7 (227-297)||(24973855-24973927)
chr7 (226-266)||(31341138-31341178)
chr7 (140-207)||(45078281-45078349)
[»] chr6 (17 HSPs)
chr6 (69-141)||(27857423-27857496)
chr6 (226-320)||(5328862-5328958)
chr6 (229-324)||(5884947-5885044)
chr6 (93-142)||(33385593-33385642)
chr6 (226-266)||(4420561-4420601)
chr6 (57-138)||(26559159-26559241)
chr6 (69-209)||(33887831-33887968)
chr6 (226-276)||(2514635-2514686)
chr6 (226-276)||(24774691-24774742)
chr6 (227-276)||(4248891-4248941)
chr6 (226-275)||(10452446-10452496)
chr6 (93-138)||(2732204-2732249)
chr6 (226-267)||(30784500-30784541)
chr6 (58-137)||(738462-738542)
chr6 (226-324)||(9027461-9027561)
chr6 (226-262)||(30865430-30865466)
chr6 (236-298)||(31668781-31668845)
[»] chr1 (25 HSPs)
chr1 (226-326)||(30259573-30259675)
chr1 (58-142)||(32515362-32515447)
chr1 (227-266)||(6265038-6265077)
chr1 (244-324)||(35350505-35350587)
chr1 (54-142)||(18327063-18327152)
chr1 (226-299)||(45107532-45107606)
chr1 (57-142)||(15581318-15581404)
chr1 (58-142)||(3597202-3597287)
chr1 (226-266)||(35080156-35080196)
chr1 (59-139)||(38001663-38001743)
chr1 (98-141)||(7941672-7941715)
chr1 (227-324)||(36602674-36602773)
chr1 (69-142)||(4868464-4868537)
chr1 (55-93)||(14559086-14559124)
chr1 (228-266)||(24702205-24702243)
chr1 (227-265)||(26293193-26293231)
chr1 (227-276)||(46499941-46499991)
chr1 (228-266)||(50319236-50319274)
chr1 (227-276)||(5422007-5422056)
chr1 (226-263)||(15437910-15437947)
chr1 (67-142)||(8780354-8780430)
chr1 (226-266)||(23895280-23895320)
chr1 (223-267)||(32515521-32515565)
chr1 (56-103)||(34668759-34668807)
chr1 (226-266)||(45999374-45999414)
[»] chr5 (18 HSPs)
chr5 (58-141)||(10640019-10640102)
chr5 (229-324)||(29115302-29115399)
chr5 (226-308)||(7096213-7096297)
chr5 (226-326)||(37063160-37063262)
chr5 (233-324)||(26516182-26516275)
chr5 (227-274)||(39128574-39128622)
chr5 (226-324)||(39257472-39257572)
chr5 (62-136)||(13244476-13244551)
chr5 (58-137)||(13264027-13264106)
chr5 (233-289)||(13224348-13224406)
chr5 (228-284)||(20982223-20982281)
chr5 (68-112)||(1084070-1084115)
chr5 (226-267)||(14295449-14295490)
chr5 (58-142)||(42646955-42647039)
chr5 (227-298)||(18897761-18897833)
chr5 (226-266)||(35135748-35135788)
chr5 (58-142)||(35445765-35445849)
chr5 (58-117)||(36796628-36796688)
[»] scaffold0100 (1 HSPs)
scaffold0100 (235-321)||(42504-42592)
[»] chr4 (29 HSPs)
chr4 (228-276)||(36048733-36048781)
chr4 (229-318)||(51555956-51556047)
chr4 (229-266)||(25487634-25487671)
chr4 (98-142)||(23819153-23819197)
chr4 (226-266)||(51044545-51044585)
chr4 (56-142)||(2996637-2996724)
chr4 (227-266)||(3175895-3175934)
chr4 (226-276)||(47970251-47970302)
chr4 (58-93)||(55870263-55870298)
chr4 (226-285)||(4191662-4191724)
chr4 (282-324)||(9316488-9316530)
chr4 (50-175)||(19304962-19305083)
chr4 (60-141)||(21157833-21157915)
chr4 (58-139)||(25717660-25717742)
chr4 (56-137)||(37636105-37636187)
chr4 (231-324)||(43533530-43533624)
chr4 (69-142)||(50298580-50298653)
chr4 (228-266)||(54277402-54277440)
chr4 (226-275)||(3662283-3662332)
chr4 (70-142)||(8328052-8328125)
chr4 (70-138)||(18628486-18628555)
chr4 (68-137)||(25904154-25904223)
chr4 (226-317)||(36734784-36734877)
chr4 (58-139)||(55437144-55437225)
chr4 (231-267)||(2987132-2987168)
chr4 (55-142)||(25896848-25896936)
chr4 (232-264)||(41433376-41433408)
chr4 (99-139)||(52754666-52754706)
chr4 (143-210)||(53673660-53673728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (227-324)||(27460-27559)
[»] scaffold0428 (1 HSPs)
scaffold0428 (93-142)||(3970-4019)
[»] scaffold0508 (1 HSPs)
scaffold0508 (227-274)||(9862-9910)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 40944119 - 40943766
Alignment:
Q  1 gatcaaactttaatactatccatacaattatatttcaactaaaatgcattaggtatatttggattagcttatttgagtttatctaatgacata-gcactt 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  40944119 gatcaaactttaatactatccatacaattagatttcaactaaaatgcattaggtatgtttggattagcttatttgagtttatctaatgacataagcactt 40944020  T
Q  100 gtgaaactgtttggaaaagtttatgaaaacagcttatgacatgatatgtccacaagttgtttccaacttgtttccacaagttctccatgatgcttatgaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40944019 gtgaaactgtttggaaaagtttatgaaaacagcttatgacatgatatgtccacaagttgcttccaacttgtttccacaagttctccatgatgcttatgaa 40943920  T
Q  200 aacagtttataggatcgtagttgaatgtttgactttattttattttttgttatagaagtagcttataataagcactttatgataaatgtttatgatatat 299  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40943919 aacagtttataggatcgtagtccaatgtttgactttattttattttttgttatagaagtagcttataataagcactttatgataaatgtttatgatatat 40943820  T
Q  300 gtgtttaattaagctgtttatccaatcttctctcttgctatttatgataaatgt 353  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40943819 gtgtttaattaagctgtttatcaaatcttctctcttgctatttatgataaatgt 40943766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 324
Target Start/End: Original strand, 33197327 - 33197425
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||||||||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||  ||||||| |||| |||||||||| || |||||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtgtttaatttagttgtttatccaa 33197425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 31461421 - 31461325
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatc 321  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||| ||||| ||||||| | ||||||| || | ||| ||||||||| ||||||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtgcttaattaagttgtttatc 31461325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 11393453 - 11393552
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||| |||||| ||| ||||| ||||||| ||||||||| |||||||||| |||||||||   || || |||| ||| |||||||||||||||||||||    
T  11393453 tttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaa 11393552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 11410114 - 11410213
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||| |||||| ||| ||||| ||||||| ||||||||| |||||||||| |||||||||   || || |||| ||| |||||||||||||||||||||    
T  11410114 tttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaa 11410213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 32098395 - 32098497
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt----tatgataaatgtttatgatatatgtgtttaattaagctgtttatc 321  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||    |||||||| |||||||| |||| |   |||| |||| ||||||||    
T  32098395 tttgactttattttatcttttgttatagaaatagcttatatataagcatttagtatatgataactgtttatgctataagcacttaagtaagttgtttatc 32098494  T
Q  322 caa 324  Q
    |||    
T  32098495 caa 32098497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 3102677 - 3102577
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| ||||| |||| || ||||||||| ||||||| || |||||||||  |||||| | || | | ||||| ||||||||||||||    
T  3102677 gtttgactttattttatattttgctataaaaatagcttatacataagcagttatatgataaacatttatgttttaagcgcttaataaagctgtttatcca 3102578  T
Q  324 a 324  Q
    |    
T  3102577 a 3102577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 11393747 - 11393827
Alignment:
Q  232 ctttattttattttttgttatagaagtagcttata-ataagcacttta-tgataaatgtttatgatatatgtgtttaatta 310  Q
    ||||||| ||| ||||| ||||||| ||||||||| |||||||||| | ||||||||||||||| |||| ||| |||||||    
T  11393747 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtgcttaatta 11393827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 11410408 - 11410488
Alignment:
Q  232 ctttattttattttttgttatagaagtagcttata-ataagcacttta-tgataaatgtttatgatatatgtgtttaatta 310  Q
    ||||||| ||| ||||| ||||||| ||||||||| |||||||||| | ||||||||||||||| |||| ||| |||||||    
T  11410408 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtgcttaatta 11410488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 17952787 - 17952827
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  17952787 gtttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 40759006 - 40758962
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataataag 271  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  40759006 tttgactttattttatcttttgttatggaaatagcttataataag 40758962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 5902508 - 5902555
Alignment:
Q  95 cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||| ||||||||||| |  |||||||||||||||||||||||    
T  5902508 cacttgtgagactgtttggaagaacttatgaaaacagcttatgacatg 5902555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 38355201 - 38355142
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataataagcactt-tatgataaa 285  Q
    ||||||| |||||||||||  ||||||||| |||||||||||||| |||| |||||||||    
T  38355201 tttgactctattttattttacgttatagaaatagcttataataagtacttatatgataaa 38355142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 40158869 - 40158782
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||| |||||||||||  |||||| ||||||| | |||||||| |||| ||||   |  |||||||||||||||||||||||    
T  40158869 tatttggattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatg 40158782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 40776028 - 40776102
Alignment:
Q  68 cttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||| ||||||||||||| | ||||| |||||| | || |||||||||| |  ||||||||||||||||||||||    
T  40776028 cttacttgagtttatctactaacataagcacttataaacctgtttggaagaacttatgaaaacagcttatgacat 40776102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 42852621 - 42852699
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagct 133  Q
    |||||||||| ||||||||||  ||||||  || |||| |||||||||| ||||||||||| ||  |||||||||||||    
T  42852621 tatttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagcctatgaaaacagct 42852699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 25609778 - 25609729
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  25609778 ttgactttattttatcttttcttatagaaatagcttatacataagcactt 25609729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 41170759 - 41170678
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    |||||||| ||||||||||||||||||| | |||| | ||||||||| ||| ||||||| |  ||||||||| || ||||||    
T  41170759 tttggattggcttatttgagtttatctactaacataaacacttgtgagactatttggaataacttatgaaaatagtttatga 41170678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 17443565 - 17443605
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagct 133  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  17443565 agcacttgtgagactgtttggaagagtttatggaaacagct 17443605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 19629282 - 19629246
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagctt 263  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  19629282 tttgactttaatttattttttgttatagaaatagctt 19629246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 19826183 - 19826147
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagctt 263  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  19826183 tttgactttaatttattttttgttatagaaatagctt 19826147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 28803592 - 28803652
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    ||||||||||||||||| ||||||||| ||| || |||||| |||||||||| ||||||||    
T  28803592 gtttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataa 28803652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 29633055 - 29633015
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataa 267  Q
    |||||||||||| ||||||||||||||||| || |||||||    
T  29633055 tttgactttattctattttttgttatagaaataacttataa 29633015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 37053578 - 37053518
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    |||||||||||||||||||| |||||||||| |||  |||| |||||||||| ||||||||    
T  37053578 gtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataa 37053518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 1160 - 1259
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||| | ||||||| |||| ||  ||||||||| ||||||||||    
T  1160 gtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 2815 - 2716
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||| | ||||||| |||| ||  ||||||||| ||||||||||    
T  2815 gtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 2716  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 34563235 - 34563137
Alignment:
Q  225 tgtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatc 321  Q
    ||||||||||||||||||  ||||| |||||| || |||||| |||||||||| ||||||||||||||||| |||| | ||||||||||| ||||||||    
T  34563235 tgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 7026710 - 7026615
Alignment:
Q  231 actttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||||| ||||||||||  ||||||||||  |||||||||| ||||||||||||||||| | ||  || ||||||||| |||||||||||    
T  7026710 actttattttatcttttgttataacagtagcttatgcataagcacttatatgataaatgtttatgctgtaaatgcttaattaagttgtttatccaa 7026615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 2487929 - 2488014
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| ||||||||||||| ||||| |||||| ||||||||||| ||||||||| | |  ||||||||||| ||||| |||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacatg 2488014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 14949872 - 14949807
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtt 289  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  14949872 gtttgactctattttatcttttgttatagaagtagcttatacataagaacttgtatgataaatgtt 14949807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 16162909 - 16162827
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    |||||||| ||||||||||||||||||| |  ||||  ||||||||| ||||||||  |||  ||||||||||||||||||||    
T  16162909 tttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 16162827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 9541093 - 9541170
Alignment:
Q  65 tagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||||||||||| |||||| ||||||| |||| |||   ||||||||| | |||||||||||||| ||||||||||    
T  9541093 tagcttatttgagtctatctactgacataagcacgtgtattactgtttgggagagtttatgaaaacatcttatgacat 9541170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 11000648 - 11000693
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataataagc 272  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||    
T  11000648 tttgactttattttatcttttgttatggaaatagcttataataagc 11000693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 30191070 - 30191147
Alignment:
Q  66 agcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||||||||||| || |||| |||||||| | ||||||||| | || ||||| ||||| |||||||||||    
T  30191070 agcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacatg 30191147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 26716542 - 26716618
Alignment:
Q  246 ttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttat 320  Q
    ||||||||||||||||||||| |||||||||| ||| |||| |||||||| |||| ||| |||||| || |||||||    
T  26716542 ttgttatagaagtagcttatacataagcacttatataataagtgtttatgctataggtgcttaatttagttgtttat 26716618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 14482185 - 14482126
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    |||||||||||||||| ||||||||||||| ||| ||||| |||||||||| ||||||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataa 14482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 39551128 - 39551215
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||  |||||||||| |||||||  || ||| ||| |||||||||||||||| | | |||||| ||||| |||||||||||    
T  39551128 tatttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaacttatgacatg 39551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 42370324 - 42370367
Alignment:
Q  99 tgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||    
T  42370324 tgtgaaactgtttgggaaagtttatgaaaatagcgtatgacatg 42370367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 4251091 - 4251020
Alignment:
Q  69 ttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| | |||||| ||||||||||  ||||| ||||||||  | ||||||||||||| ||||||||||||    
T  4251091 ttatttgaatctatctattgacatagca--tgtgagactgtttgagagagtttatgaaaactgcttatgacatg 4251020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 26820183 - 26820137
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataataagc 272  Q
    ||||||||||||||||| ||||||||||||| || |||||| |||||    
T  26820183 gtttgactttattttatcttttgttatagaaataacttatactaagc 26820137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 7714391 - 7714310
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    ||||||||  |||||||||| |||| ||||| ||||  ||||||||| |||||||||||||| || || ||||| |||||||    
T  7714391 tttggattgacttatttgagcttatataatgtcataaacacttgtgagactgtttggaaaagcttgtggaaacaacttatga 7714310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 12972833 - 12972740
Alignment:
Q  233 tttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||||| || || |||||| ||| ||||||||| |||||||||| ||||||||||| ||||| |||| | | ||||||||| ||||| |||||    
T  12972833 tttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaa 12972740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 26499854 - 26499785
Alignment:
Q  69 ttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    |||||||| |||||||| ||||||| |||||||||| ||| ||| | | || ||||||||||||||||||    
T  26499854 ttatttgaatttatctactgacataagcacttgtgagactattttgtagaggttatgaaaacagcttatg 26499785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 29699237 - 29699164
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatata 298  Q
    |||||||||||||||| ||||||||||||| || ||| || ||||||| || |||||||||| |||||| ||||    
T  29699237 tttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctata 29699164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 33553389 - 33553304
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||||||||||| |||||||   |||| |||||||||||  |||||||||| || ||||  || || |||||||||||    
T  33553389 tttggattagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttatgacatg 33553304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 44236744 - 44236797
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtt 110  Q
    ||||||||| |||||||||||||||||| || ||| ||||||||||| ||||||    
T  44236744 tttggattaccttatttgagtttatctactggcataagcacttgtgagactgtt 44236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 26215480 - 26215440
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  26215480 gtttaactttattttatcttttgttatagaaatagcttata 26215440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 29169893 - 29169941
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    ||||||||||||| ||||||| | || ||||||||||||| ||||||||    
T  29169893 agcacttgtgaaattgtttgggagagcttatgaaaacagcatatgacat 29169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 35534947 - 35535007
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    ||||||||||||||||  |||| |||||||| ||||||||| |||||||||| ||||||||    
T  35534947 gtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 39392747 - 39392787
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  39392747 gtttgactttattttatcttttgttatagaaatagtttata 39392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 43908657 - 43908701
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    ||||||||||||||||||||  | |||||| ||||||||||||||    
T  43908657 agcacttgtgaaactgtttgagagagtttaagaaaacagcttatg 43908701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 21872211 - 21872301
Alignment:
Q  53 gtatatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||| ||||||||| |||||||||  ||||||| ||||||| |||||||||| |||||||||||||| || |||||| |||||||||||||    
T  21872211 gtatgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatg 21872301  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 37273247 - 37273135
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatgatatgtccacaagttgtttccaacttgtttccacaagttctccatgat-g 191  Q
    |||||| |||| ||||||||| | || ||||| ||||| ||||||||     ||||||| ||||||||| |||||| |||||| |||||||||| ||| |    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgac-----atgtccataagttgttttcaacttatttccataagttctccaagatag 37273153  T
Q  192 cttatgaaaacagtttat 209  Q
    ||||||||||||||||||    
T  37273152 cttatgaaaacagtttat 37273135  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 54775112 - 54775016
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcac-tttatgataaatgtttatgatatatgtgtttaattaagctgtttat 320  Q
    ||||||||||||||||| ||||||||||||| || |||| |  ||||||| ||||||||||   |||||| |||||||| |||||||||||||||||    
T  54775112 gtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttat 54775016  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 49587002 - 49587052
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataataagcactt 276  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  49587002 gtttgactttattttatcttttgttatagaaatagcttatagtaagcactt 49587052  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 24624357 - 24624274
Alignment:
Q  60 tggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||| ||||| ||||  ||||||| | |||| ||||||||| | ||||||||||| || |||||||||||||||||||||||    
T  24624357 tggattggcttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatg 24624274  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22667554 - 22667468
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    ||||| |||| ||||||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||| ||||||| ||| ||||    
T  22667554 tatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22667468  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22724193 - 22724107
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    ||||| |||| ||||||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||| ||||||| ||| ||||    
T  22724193 tatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttatggaaacagcatataacat 22724107  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 30668892 - 30668973
Alignment:
Q  59 ttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||||| ||||||||| || ||||| |||||||    |||||||| ||||||||||| |||||||||||| ||||||||||    
T  30668892 ttggattaacttatttgaatt-atctattgacataaattttgtgaaattgtttggaaaaatttatgaaaacaacttatgacat 30668973  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 38462265 - 38462167
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttat-aataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcc 322  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||||| |||||||| | || | | ||||||||  |||||||||    
T  38462265 gtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttatgctttaggcgcttaattaacttgtttatcc 38462167  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 44014719 - 44014801
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    |||||||| ||||||||||||||||||| |  ||||  ||||||||| ||||||||  |||  ||||||||||||||||||||    
T  44014719 tttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaacagcttatgac 44014801  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 20192691 - 20192743
Alignment:
Q  225 tgtttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||||||||    
T  20192691 tgtttgactttattttatcttttgttatataaatagcttatacataagcactt 20192743  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 42039140 - 42039092
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  42039140 tgactttattttattttttgttacagaaatagcttatacataagcactt 42039092  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 44284144 - 44284184
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  44284144 gtttgactttgttttattttttgttatagaaatagcttata 44284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 51278243 - 51278339
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttat 320  Q
    |||||||||||||| || ||||||||||||| ||||||||| || |||| || ||||||||||| ||||  ||||   |||||||||| ||||||||    
T  51278243 gtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataaatgcttatattataaacgtttaattaaactgtttat 51278339  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 53457361 - 53457321
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  53457361 gtttgactttattttatcttttgttatcgaagtagcttata 53457321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 1395654 - 1395615
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  1395654 tttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 24158429 - 24158492
Alignment:
Q  50 taggtatatttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttg 112  Q
    |||| ||||||||||| |||||||| || ||||||| |||||| || |||||||||||||||||    
T  24158429 taggcatatttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttg 24158492  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 34318071 - 34318032
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  34318071 tttgactttattttatattttgttatagaaatagcttata 34318032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 39971302 - 39971203
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||| ||||||||||| |||||||||| ||||| |||||| |||||||||| |||||||| |||| ||| |||| | | ||||||||  |||| ||||||    
T  39971302 tttggctttattttatcttttgttatataagtaacttatacataagcacttatatgataagtgttgatgttataagagcttaattaaattgttaatccaa 39971203  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 905058 - 905096
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttata 905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 23785320 - 23785254
Alignment:
Q  146 tgtccacaagttgtttccaacttgtttccacaagttctccatgat-gcttatgaaaacagtttatag 211  Q
    |||||| ||||||||| || |||||||||| ||| |||||||||  |||| ||||||||||||||||    
T  23785320 tgtccataagttgttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttatag 23785254  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 27795938 - 27795988
Alignment:
Q  62 gattagcttatttgagtttatctaatgacat-agcacttgtgaaactgttt 111  Q
    |||||||||||||||| ||||||| || ||| |||||||||||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaactgttt 27795988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 34254775 - 34254813
Alignment:
Q  103 aaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  34254775 aaactgtttggaaaagcttatgaaaacagtttatgacat 34254813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 41028939 - 41028997
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    ||||||||||||| | ||||||||||||| ||||||||| |||||||||| ||||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataa 41028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 44237555 - 44237513
Alignment:
Q  69 ttatttgagtttatctaatgacat-agcacttgtgaaactgtt 110  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  44237555 ttatttgagtttatctactgacataagcacttgtgaaactgtt 44237513  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 24887369 - 24887410
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataa 267  Q
    ||||||||||||||||| | ||||||||||| ||||||||||    
T  24887369 gtttgactttattttatctattgttatagaaatagcttataa 24887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 28881691 - 28881760
Alignment:
Q  69 ttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    ||||||||| ||||||| ||| |||||| |||||| | | ||||| | || |||||||||||||||||||    
T  28881691 ttatttgagcttatctactgatatagcatttgtgagattatttgggagagcttatgaaaacagcttatga 28881760  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 41164911 - 41164996
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||||||||||  |||||||  | |||| | |||||||| | |||||||||||  |||| ||||||| ||||||||||    
T  41164911 tttggattagcttatttgaacttatctaccggcataagaacttgtgacaatgtttggaaaaacttattaaaacagtttatgacatg 41164996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 43115201 - 43115120
Alignment:
Q  62 gattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||| |||||| | || ||||||| |||||||  ||||||||| | ||||||||| |||||||| ||||| |||||||||||    
T  43115201 gatttgcttatataaggttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatg 43115120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 54837003 - 54837040
Alignment:
Q  105 actgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  54837003 actgtttggaagaatttatgaaaacagcttatgacatg 54837040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 28306142 - 28306102
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||| |||||||||||||  |||||||||    
T  28306142 gtttgactttattttactttttgttatagagatagcttata 28306102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 29094334 - 29094270
Alignment:
Q  257 gtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgttta 319  Q
    |||||||||| |||| ||||| |||||||| |||||||| |||| | ||||||||||||||||||    
T  29094334 gtagcttatacataaacacttatatgataagtgtttatgctataagcgtttaattaagctgttta 29094270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 31365232 - 31365312
Alignment:
Q  60 tggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgaca 140  Q
    |||||| ||||||||||||||||||| || ||||    |||||| ||||||||| | |  ||||||| |||||||||||||    
T  31365232 tggattggcttatttgagtttatctattggcataatttttgtgacactgtttgggagaacttatgaatacagcttatgaca 31365312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 40122838 - 40122878
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||| ||| |||||||||    
T  40122838 gtttgactttattttatcttttgttattgaaatagcttata 40122878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 45535369 - 45535405
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagctt 263  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  45535369 tttgactttaatttattttttgttatagaaatagctt 45535405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 33894776 - 33894691
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||  | || ||||||||||||| |||||||||    
T  33894776 tttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatg 33894691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 3501053 - 3501147
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactttatgataaatgtttatgatatatgtgtttaattaagctgtttat 320  Q
    |||||||||||||||| |||| ||||| || ||||||||| ||||||| | | |||||| || ||||| |||| ||||||||||||| |||||||    
T  3501053 tttgactttattttatcttttattatataattagcttatacataagcattatgtgataactgcttatgttataagtgtttaattaagttgtttat 3501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 49060523 - 49060484
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  49060523 tttgactttattttattttttgttatagaaatagcttata 49060484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 3836602 - 3836688
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    ||||||||||  |||||||||| ||||||| || | || |||||||||||||||||||| | |  ||||||||| ||||||||||||    
T  3836602 tatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaatagcttatgacat 3836688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 22388001 - 22388090
Alignment:
Q  237 ttttattttttgttatagaagtagcttata-ataagcacttta-tgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||| ||||||||||||| ||||||||  |||||||||| | |||||| |||||||| |||| | | ||||||||| |||||||||||    
T  22388001 ttttatcttttgttatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaa 22388090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 32410688 - 32410611
Alignment:
Q  59 ttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagctta 135  Q
    ||||||| ||||||||||| ||||||| || |||| ||| |||||||||||||| ||| |  ||||||||||||||||    
T  32410688 ttggattggcttatttgagcttatctattggcataagcatttgtgaaactgttttgaataacttatgaaaacagctta 32410611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 3468685 - 3468641
Alignment:
Q  140 atgatatgtccacaagttgtttccaacttgtttccacaagttctc 184  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||    
T  3468685 atgacatgtccataagttgtttccaacttatttccacaagttctc 3468641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 35808990 - 35809046
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactttatga 281  Q
    |||||||| |||||||| ||||||||||||| ||||||||| |||| ||||||||||    
T  35808990 gtttgactatattttatcttttgttatagaaatagcttatacataaacactttatga 35809046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 19624316 - 19624273
Alignment:
Q  68 cttatttgagtttatctaatgacat-agcacttgtgaaactgtt 110  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  19624316 cttatttgagtttatctattgacataagcacttgtgaaactgtt 19624273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 42656498 - 42656459
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttata 42656459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 1710874 - 1710801
Alignment:
Q  62 gattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagctta 135  Q
    |||||||||||||||| ||||||| | |||| | | ||||||| ||||||| |||||||||| ||||||||||||    
T  1710874 gattagcttatttgagcttatctactaacataatcccttgtgacactgttt-gaaaagtttaagaaaacagctta 1710801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 5715123 - 5715164
Alignment:
Q  225 tgtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  5715123 tgtttgactttattttatctttcgttatagaaatagcttata 5715164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 326
Target Start/End: Original strand, 6552365 - 6552458
Alignment:
Q  235 tattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaatc 326  Q
    |||||||| ||||||| ||||| || ||| || |||||||||| |||||||| |  ||||||| || ||||||||||||| || ||||||||||    
T  6552365 tattttatcttttgttgtagaaataacttgtacataagcacttatatgataagtacttatgatttaagtgtttaattaagttgcttatccaatc 6552458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 12242229 - 12242128
Alignment:
Q  225 tgtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcc 322  Q
    ||||| ||||| |||||||||||||||| ||| | ||||||| |||| |||||  |||||||  | ||||| |||| |||||||||| || |||||||||    
T  12242229 tgtttaactttgttttattttttgttatggaaatggcttatacataaacacttccatgataagagcttatgctataagtgtttaattgagttgtttatcc 12242130  T
Q  323 aa 324  Q
    ||    
T  12242129 aa 12242128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 28178950 - 28178913
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  28178950 tgactttattttatcttttgttatagaaatagcttata 28178913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 40009589 - 40009544
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    ||||||||||||||||||||| | | |||||||||| |||||||||    
T  40009589 agcacttgtgaaactgtttggtagaatttatgaaaatagcttatga 40009544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 45593805 - 45593866
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaa 285  Q
    ||||||||||||||||| |||||||| |||| ||||||||| ||||||| || |||||||||    
T  45593805 gtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaa 45593866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 46281218 - 46281247
Alignment:
Q  227 tttgactttattttattttttgttatagaa 256  Q
    ||||||||||||||||||||||||||||||    
T  46281218 tttgactttattttattttttgttatagaa 46281247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 753290 - 753390
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    |||||||||||||| || ||||||||||||| |||  |||| | |||| ||| ||||||||||||||||| ||||     ||||||||| ||||||||||    
T  753290 gtttgactttatttcatattttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataaacacttaattaagttgtttatcca 753389  T
Q  324 a 324  Q
    |    
T  753390 a 753390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 5006595 - 5006635
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||||| | |||||||||    
T  5006595 gtttgactttattttatcttttgttataggaatagcttata 5006635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 9038167 - 9038111
Alignment:
Q  156 ttgtttccaacttgtttccacaagttctccatgat-gcttatgaaaacagtttatag 211  Q
    |||||| || ||| ||| ||||||||||||||||| | |||||||||||||||||||    
T  9038167 ttgttttcagcttattttcacaagttctccatgatagtttatgaaaacagtttatag 9038111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 9527176 - 9527244
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttat 292  Q
    ||||||||||||| ||| ||||||||||||  |||| |||| |||||||||| |||||||| |||||||    
T  9527176 gtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagtgtttat 9527244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 10079426 - 10079466
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  10079426 gtttgattatattttatcttttgttatagaagtagcttata 10079466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 20547320 - 20547396
Alignment:
Q  67 gcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| ||||||||||||||||| | ||||||||| ||||||||  | || ||||| | ||||| |||||||||    
T  20547320 gcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttatggagacagcctatgacatg 20547396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 24973927 - 24973855
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatat 297  Q
    ||||| |||||||||| ||||||||||||| |||||| || |||||||||| |||||| || | |||||||||    
T  24973927 tttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgatcaacgattatgatat 24973855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 31341178 - 31341138
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  31341178 gtttgactttattttatcttttgttatacaaatagcttata 31341138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 45078349 - 45078281
Alignment:
Q  140 atgatatgtccacaagttgtttccaacttgtttccacaagttctccatgat-gcttatgaaaacagttt 207  Q
    |||| ||||||| ||| ||||| |||||| |||||||||||| ||| |||| ||||||||||| |||||    
T  45078349 atgacatgtccataagctgttttcaacttatttccacaagttatccgtgatagcttatgaaaaaagttt 45078281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 27857496 - 27857423
Alignment:
Q  69 ttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacat 27857423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 320
Target Start/End: Complemental strand, 5328958 - 5328862
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcac-tttatgataaatgtttatgatatatgtgtttaattaagctgtttat 320  Q
    ||||||||||||||||| ||||||||||||| || |||| |  ||||||| ||||||||||   |||||| |||||||| |||||||||||||||||    
T  5328958 gtttgactttattttatcttttgttatagaaataacttaaacgtaagcacttttatgataatcatttatgctatatgtggttaattaagctgtttat 5328862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 5884947 - 5885044
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||| ||||||||||||||||||||| ||  ||||| ||| |||||| ||||||| |||||| || |||| | |||||| ||||||||||||||||    
T  5884947 tgacttcattttattttttgttatagaaataatttatacatatgcacttatatgatacatgtttgtgctataagagtttaaataagctgtttatccaa 5885044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 33385642 - 33385593
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  33385642 agcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatg 33385593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 4420601 - 4420561
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4420601 gtttgactttattttatcttttgttatagaagtagcttata 4420561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 26559159 - 26559241
Alignment:
Q  57 atttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    |||||||||| |||||||||||||| ||| || |||| ||| |||||| ||||||||||| |  ||||||||||| |||||||    
T  26559159 atttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaacaacttatga 26559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 33887968 - 33887831
Alignment:
Q  69 ttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatgatatgtccacaagttgtttccaact 167  Q
    |||||||||||||| || |||||| ||||||||||| | ||||||  | | |||||||||| ||||||||||||| |     |||||||||||| |||||    
T  33887968 ttatttgagtttatttactgacattagcacttgtgacattgtttgagagaatttatgaaaatagcttatgacatgtt-----cacaagttgttttcaact 33887874  T
Q  168 tgtttccacaagttctccatgat-gcttatgaaaacagtttat 209  Q
    | |||||| |||   | || ||| |||||||||||||||||||    
T  33887873 tatttccataagcatttcaggatagcttatgaaaacagtttat 33887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 2514686 - 2514635
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    ||||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  2514686 gtttgactttattttatcttttattatagaaatagcttatacataagcactt 2514635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 24774742 - 24774691
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    ||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  24774742 gtttgactttattttatattttgttatagaaatagtttatatataagcactt 24774691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 4248941 - 4248891
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    |||||||||||||||| ||||||||| ||| ||||||||| ||||||||||    
T  4248941 tttgactttattttatcttttgttattgaaatagcttatatataagcactt 4248891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 10452446 - 10452496
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcact 275  Q
    |||||| |||||||||| ||||||||||||| ||||||||| |||||||||    
T  10452446 gtttgattttattttatattttgttatagaaatagcttatacataagcact 10452496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 2732204 - 2732249
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    ||||||||||| |||||||||||||| ||||| |||||||| ||||    
T  2732204 agcacttgtgagactgtttggaaaagcttatggaaacagctaatga 2732249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 30784541 - 30784500
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataa 267  Q
    ||||||||||||||||| |||||||||||||  |||||||||    
T  30784541 gtttgactttattttatcttttgttatagaaaaagcttataa 30784500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 738462 - 738542
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    ||||||||| |||||||||| ||||||| ||| |||  || |||||| | ||| ||  |||||||||||||||||||||||    
T  738462 tttggattaacttatttgagcttatctattgagataaacatttgtgagattgtctgataaagtttatgaaaacagcttatg 738542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 9027561 - 9027461
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| || | || ||||| ||||||||| |||||||||| ||| |||| |||| ||| |||| | | ||| |||| |||||||||||    
T  9027561 gtttgactttattttatcttctattgtagaaatagcttatagataagcacttatataataagtgttcatgctataagcgcttacttaaactgtttatcca 9027462  T
Q  324 a 324  Q
    |    
T  9027461 a 9027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 30865466 - 30865430
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagct 262  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  30865466 gtttgactttattttatcttttgttatagaaatagct 30865430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 31668781 - 31668845
Alignment:
Q  236 attttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatata 298  Q
    ||||||| ||||||||||||| ||||||||| |||||||||| |||||||| || ||||| ||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgataattgcttatgctata 31668845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 30259573 - 30259675
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttat-aataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| ||||||||||||| |||||| |  |||||||||| |||||||| ||| |||| |||| ||| || |||||| ||||||||||    
T  30259573 gtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtgtgtatgttataagtgctttattaagttgtttatcca 30259672  T
Q  324 atc 326  Q
    |||    
T  30259673 atc 30259675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 32515362 - 32515447
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||| |||||||||||||||| | ||||| |||||||||| ||||||||| | || ||||| ||||||| |||||||||    
T  32515362 tttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatg 32515447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 6265077 - 6265038
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6265077 tttgactttattttattttttgttatagaagtagcttata 6265038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 35350587 - 35350505
Alignment:
Q  244 ttttgttatagaagtagcttataa-taagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||||||||||| |||||||||| |||| |||| |||||||||||||| || |||||| ||||||||| | |||||||||||    
T  35350587 ttttgttatagaaatagcttataaataagaacttgtatgataaatgtttgtgctatatgcgtttaattatgttgtttatccaa 35350505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 18327063 - 18327152
Alignment:
Q  54 tatatttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||| ||||||||||| ||||||| || ||| ||||||| ||| ||| ||||||| |  ||||||||||| |||||||||||    
T  18327063 tatatttggattggcttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttatgacatg 18327152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 45107606 - 45107532
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatat 299  Q
    ||||||||||||||||| |||| |||||||| ||||||||| |||||||||| ||||||| ||||||||| |||||    
T  45107606 gtttgactttattttat-ttttcttatagaaatagcttatagataagcacttatatgatagatgtttatgctatat 45107532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 15581404 - 15581318
Alignment:
Q  57 atttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||| |||||||||| || ||||||| ||||||| |||||||||| | ||||||||| || | ||| ||||| |||||||||||    
T  15581404 atttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatg 15581318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 3597202 - 3597287
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatagc-acttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||  |||||||||| ||||||||||| ||| | |||||||| ||||||||||| |||| || |||| | |||||||||||    
T  3597202 tttggattgacttatttgaggttatctaatgatataaccacttgtgagactgtttggaagagttgataaaaataacttatgacatg 3597287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 35080156 - 35080196
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  35080156 gtttgactttattttattttttgttatagaaattgcttata 35080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 38001743 - 38001663
Alignment:
Q  59 ttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    |||||| |||||||||||||||||| | |||||||    |||||| ||||||||| | |  ||||||||||||||||||||    
T  38001743 ttggataagcttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 7941715 - 7941672
Alignment:
Q  98 ttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||| ||||||||||| | |||||||||||||||||||||||    
T  7941715 ttgtgagactgtttggaagaatttatgaaaacagcttatgacat 7941672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 36602773 - 36602674
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||||||||| | ||||| ||||  ||||||||| |||| ||||| |||||||||  ||||||||||| ||| |||||||| || |||| ||||    
T  36602773 tttgactttattttatctattgttgtagatatagcttatacataatcacttatatgataaaaatttatgatataagtgcttaattaaactatttaaccaa 36602674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 4868537 - 4868464
Alignment:
Q  69 ttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| |||||||| |||||||| ||||||||| ||||||||  | |||||||| ||||| |||||||||||    
T  4868537 ttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatg 4868464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 14559124 - 14559086
Alignment:
Q  55 atatttggattagcttatttgagtttatctaatgacata 93  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  14559124 atatttggattagcttatttgaggttatctactgacata 14559086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 24702243 - 24702205
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  24702243 ttgactttatttaattttttgttatagaaatagcttata 24702205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 26293193 - 26293231
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttat 265  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  26293193 tttgactttattttactttttgttatagaaatagcttat 26293231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 46499941 - 46499991
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  46499941 tttgactttattttatcttttcttatagaaatagcttatagataagcactt 46499991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 50319274 - 50319236
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 5422007 - 5422056
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataataagcactt 276  Q
    ||||||| |||||||| |||||| || ||| |||||||||||||||||||    
T  5422007 tttgactatattttatcttttgtcatggaaatagcttataataagcactt 5422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 15437947 - 15437910
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagctt 263  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  15437947 gtttgacttaattttattttttgttatagaaatagctt 15437910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 8780354 - 8780430
Alignment:
Q  67 gcttatttgagtttatctaatgacatagc-acttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||||||||||||| | || | ||||||||| |||||||  | || |||| |||||| |||||||||||    
T  8780354 gcttatttgagtttatctaatgtcgtaactacttgtgaatctgtttgagagagcttataaaaacaacttatgacatg 8780430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 23895320 - 23895280
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||| |||||||||| ||||||||||||| |||||||||    
T  23895320 gtttgaatttattttatcttttgttatagaaatagcttata 23895280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 32515521 - 32515565
Alignment:
Q  223 aatgtttgactttattttattttttgttatagaagtagcttataa 267  Q
    |||||||||||||||||||| || ||||||||||  |||||||||    
T  32515521 aatgtttgactttattttatgttctgttatagaaacagcttataa 32515565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 34668807 - 34668759
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacat-agcacttgtga 103  Q
    |||||||||| |||||||||||||||| || |||||| |||||||||||    
T  34668807 tatttggattggcttatttgagtttatgtactgacatgagcacttgtga 34668759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 45999374 - 45999414
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||| |||| ||||||||||||| |||||||||    
T  45999374 gtttgactttatcttatcttttgttatagaaatagcttata 45999414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 10640102 - 10640019
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||||||||||||||||||||||||| |||||||    |||||| | ||||||| | |  ||||||||||||||||||||||    
T  10640102 tttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacat 10640019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 29115302 - 29115399
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata-ataagcac-tttatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||||||  ||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| |||| | |  |||||||  |||||||||||    
T  29115302 tgactttattttaccttttgttgtagaaatagcttatacataagcacttttatgataaatgtttatgctataagcgcgtaattaaagtgtttatccaa 29115399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 7096213 - 7096297
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaat 308  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |||||| ||||  |||| ||||  ||||||||    
T  7096213 gtttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgattaatgcatatgctataaatgtttaat 7096297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 326
Target Start/End: Original strand, 37063160 - 37063262
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||| ||||||||||||| ||| ||||| ||||||| || ||||| ||   |||||| |||| ||  || |||||||||||||||||    
T  37063160 gtttgactttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgctataagtagttgattaagctgtttatcca 37063259  T
Q  324 atc 326  Q
    |||    
T  37063260 atc 37063262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 26516275 - 26516182
Alignment:
Q  233 tttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||| ||||||| ||||| ||||||||| |||||||||| ||||||||  | ||||| |||| | | ||||||||| |||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaa 26516182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 39128622 - 39128574
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcac 274  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  39128622 tttgactttattttatcttttgttatagaattagcttatacataagcac 39128574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 39257472 - 39257572
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatcca 323  Q
    ||||||||||||||||  ||||||||||||  |||| |||| ||||||||||  |||||||  ||||||| |||| | | ||||||||| ||||||||||    
T  39257472 gtttgactttattttaccttttgttatagagatagcatatacataagcacttacatgataatagtttatgctataagcgcttaattaagttgtttatcca 39257571  T
Q  324 a 324  Q
    |    
T  39257572 a 39257572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 13244476 - 13244551
Alignment:
Q  62 gattagcttatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttat 136  Q
    |||| ||||||||||||||||||| ||| |||  ||||| ||| ||||||||||| || ||||||||||| |||||    
T  13244476 gatttgcttatttgagtttatctattgaaataaacacttatgacactgtttggaagagcttatgaaaacaacttat 13244551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 13264027 - 13264106
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    |||||||||| ||||   ||||| | || ||||||| |||||| || ||||||||||| |||||||| ||||||||||||    
T  13264027 tttggattagtttataaaagtttctttactgacataacacttgcgagactgtttggaagagtttatggaaacagcttatg 13264106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 13224406 - 13224348
Alignment:
Q  233 tttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtt 289  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgataactgtt 13224348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 20982223 - 20982281
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataa 284  Q
    |||||||||||||||  |||||||||||| ||||||||| |||||||||| ||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataa 20982281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 1084070 - 1084115
Alignment:
Q  68 cttatttgagtttatctaatgacata-gcacttgtgaaactgtttg 112  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||    
T  1084070 cttatttgagtttatttactgacataagcacttgtgaaactgtttg 1084115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 14295490 - 14295449
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataa 267  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||    
T  14295490 gtttgactttattttatcttttgttatagaaatagctaataa 14295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 42647039 - 42646955
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgaca-tagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| ||||||||||| ||||||| ||||| |||||||||  | ||| ||||||| |  ||||||||| |||||||||||||    
T  42647039 tttggattggcttatttgagcttatctactgacattagcacttg-aagactatttggaagaacttatgaaaatagcttatgacatg 42646955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 18897761 - 18897833
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttataa-taagcactttatgataaatgtttatgatata 298  Q
    |||||||| ||||||| || |||  ||||| || ||||||| ||||||||| |||||||||||||||| ||||    
T  18897761 tttgacttaattttatcttctgtcttagaaataacttataaataagcacttcatgataaatgtttatgctata 18897833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 35135748 - 35135788
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||||||| || ||||||    
T  35135748 gtttgactttattttatcttttgttatagaaatatcttata 35135788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 35445765 - 35445849
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||| | |||||||||||||||||| |||||||    |||||| ||| ||||  | | |||||||||||||||||| |||||    
T  35445765 tttggatcatcttatttgagtttatctactgacataagttttgtgagactctttgacagaatttatgaaaacagcttataacatg 35445849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 36796628 - 36796688
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacat-agcacttgtgaaactgtttggaaaa 117  Q
    ||||||||  |||||||||| |||||||||||||| | ||||||||| |||| ||||||||    
T  36796628 tttggattgacttatttgagcttatctaatgacataaacacttgtgagactgcttggaaaa 36796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 42592 - 42504
Alignment:
Q  235 tattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatc 321  Q
    |||||||| ||||||||||||| |  |||||| |||||||||| |||||||||||| | || |||| ||||||||||||| ||||||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttatatgataaatgtgtctgctataagtgtttaattaagttgtttatc 42504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 36048781 - 36048733
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttataataagcactt 276  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  36048781 ttgactttaatttatcttttgttatagaaatagcttataataagcactt 36048733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 318
Target Start/End: Original strand, 51555956 - 51556047
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgttt 318  Q
    |||||||||||||| ||||||||||  | ||||||||| |||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||    
T  51555956 tgactttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatgttataagtgctttattaagttgttt 51556047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 25487634 - 25487671
Alignment:
Q  229 tgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||||||||||||||| |||||||||    
T  25487634 tgactttattttattttttgttatagaaatagcttata 25487671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 23819197 - 23819153
Alignment:
Q  98 ttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||    
T  23819197 ttgtgagactgtttggaagagtttaagaaaacagcttatgacatg 23819153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 51044545 - 51044585
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  51044545 gtttgactttattttatcttttgttatagaaatagcttata 51044585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 2996724 - 2996637
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||| |||||||||||||||  |||| || ||||||| |||||| ||| ||||||||  | || ||||||||||| |||||||||||    
T  2996724 tatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatg 2996637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 3175934 - 3175895
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata 266  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  3175934 tttgactttattttatcttttgctatagaagtagcttata 3175895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 47970302 - 47970251
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt 276  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||    
T  47970302 gtttgacttcattttatcttttgttatagaaatagcttatacataagcactt 47970251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 55870263 - 55870298
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacata 93  Q
    ||||||||| ||||||||||||||||||||||||||    
T  55870263 tttggattaacttatttgagtttatctaatgacata 55870298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 4191724 - 4191662
Alignment:
Q  226 gtttgactttatttt-attttttgttatagaagtagcttata-ataagcactt-tatgataaa 285  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||||||||| |||||||||    
T  4191724 gtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataaa 4191662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 9316530 - 9316488
Alignment:
Q  282 taaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||||| |||| ||| |||||||||||||||||||||    
T  9316530 taaatgtttatgctataagtgcttaattaagctgtttatccaa 9316488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 19305083 - 19304962
Alignment:
Q  50 taggtatatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatgatatgt 148  Q
    ||||| ||||||||||  |||||||||| ||||||| ||||||| ||| |||||| | ||| ||| | | ||| || ||||||||||||||     ||||    
T  19305083 taggtgtatttggattgacttatttgagattatctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagcttatgac-----atgt 19304989  T
Q  149 ccacaagttgtttccaacttgtttcca 175  Q
    ||| ||||||||| || ||||||||||    
T  19304988 ccataagttgttttcagcttgtttcca 19304962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 21157915 - 21157833
Alignment:
Q  60 tggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 141  Q
    |||||| ||||||||||| | ||||| ||||||| |||||||| | ||||||||||| || |||   ||||||||||||||||    
T  21157915 tggatttgcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttatgacat 21157833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 25717742 - 25717660
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    ||||||||  |||||||||| |||| ||  |||||| |||||||||||| ||||||||| || ||||| ||||| ||||||||    
T  25717742 tttggattgtcttatttgagcttatgtaccgacataagcacttgtgaaattgtttggaagagcttatggaaacaacttatgac 25717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 37636105 - 37636187
Alignment:
Q  56 tatttggattagcttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    ||||||||||   ||||||||||||||||| | ||||| |||| ||| ||||||||||| | |||||||  ||||||||||||    
T  37636105 tatttggattgatttatttgagtttatctactaacataagcacctgtaaaactgtttgggagagtttatagaaacagcttatg 37636187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 43533530 - 43533624
Alignment:
Q  231 actttattttattttttgttatagaagtagcttataataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    ||||||||||| |||||| | ||||| || |||||| ||||||||| |||||||||||||| | || || | | |||| |||| |||||||||||    
T  43533530 actttattttagtttttgatttagaaataacttatagtaagcacttatatgataaatgtttttaatgtaagcgcttaactaagttgtttatccaa 43533624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 50298653 - 50298580
Alignment:
Q  69 ttatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||| || ||||||| ||||||| |||||||||| |||||||||||||  |||| |||| |||||||||||||    
T  50298653 ttattttagcttatctactgacataagcacttgtgagactgtttggaaaaacttat-aaaatagcttatgacatg 50298580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 54277402 - 54277440
Alignment:
Q  228 ttgactttattttattttttgttatagaagtagcttata 266  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  54277402 ttgactttattttatcttttgttatagaagtagtttata 54277440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 3662332 - 3662283
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttataataagcact 275  Q
    ||||||||||||||||| ||||||||||| | ||| |||| |||||||||    
T  3662332 gtttgactttattttatcttttgttataggaatagtttatcataagcact 3662283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 8328052 - 8328125
Alignment:
Q  70 tatttgagtttatctaatgacata-gcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||| ||||||| || |||| |||||| ||| ||||||||||| || |||||||||||  ||||||||||    
T  8328052 tatttgagcttatctattggcataagcacttatgagactgtttggaatagcttatgaaaacaatttatgacatg 8328125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 18628486 - 18628555
Alignment:
Q  70 tatttgagtttatctaatgacatag-cacttgtgaaactgtttggaaaagtttatgaaaacagcttatga 138  Q
    |||||||| ||||||| |||||||  ||||||||| ||||||||| | || ||||||||||| |||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 25904154 - 25904223
Alignment:
Q  68 cttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatg 137  Q
    |||||||||| ||||| |||||||||    |||||| ||||||||| | || ||||||||||||||||||    
T  25904154 cttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatg 25904223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 36734877 - 36734784
Alignment:
Q  226 gtttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtt 317  Q
    ||||||||||||||||  |||||||||||||  || ||||| |||||||||| ||||||||| || |||| |||| |  |||||||||| ||||    
T  36734877 gtttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaaggtatatgttataagcttttaattaagttgtt 36734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 55437225 - 55437144
Alignment:
Q  58 tttggattagcttatttgagtttatctaatgacatagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    |||||||| ||||||||||||||||||| || ||||    |||||||| |||||| || |  ||||||||||| ||||||||    
T  55437225 tttggattggcttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaacttatgac 55437144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 2987168 - 2987132
Alignment:
Q  231 actttattttattttttgttatagaagtagcttataa 267  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  2987168 actttattttattttttgttgtagaaatagcttataa 2987132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 25896936 - 25896848
Alignment:
Q  55 atatttggattagcttatttgagtttatctaatgaca-tagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    |||||||||||  |||||||||||||||||| |  || |||||||||||| ||||||| | | || ||||  ||| |||||||||||||    
T  25896936 atatttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttatagaaatagcttatgacatg 25896848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 41433408 - 41433376
Alignment:
Q  232 ctttattttattttttgttatagaagtagctta 264  Q
    ||||||||||||||||||||||||| |||||||    
T  41433408 ctttattttattttttgttatagaaatagctta 41433376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 52754706 - 52754666
Alignment:
Q  99 tgtgaaactgtttggaaaagtttatgaaaacagcttatgac 139  Q
    ||||||||||||||||| || |||||||||||| |||||||    
T  52754706 tgtgaaactgtttggaagagcttatgaaaacagtttatgac 52754666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 53673660 - 53673728
Alignment:
Q  143 atatgtccacaagttgtttccaacttgtttccacaagttctccatgat-gcttatgaaaacagtttata 210  Q
    ||||||||| ||||||||| || ||| ||| || ||| |||||| ||| ||||||||||||||||||||    
T  53673660 atatgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 27559 - 27460
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcactt-tatgataaatgtttatgatatatgtgtttaattaagctgtttatccaa 324  Q
    |||||||||||||||| || |||||||||| || |||||| ||||||||||  |||||||  | ||||| |||| | ||||| ||||| |||||||||||    
T  27559 tttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataagcgtttatttaagttgtttatccaa 27460  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 4019 - 3970
Alignment:
Q  93 agcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacatg 142  Q
    ||||||||||| ||||||||||| |||||||| |||| ||| ||||||||    
T  4019 agcacttgtgagactgtttggaagagtttatggaaacggctcatgacatg 3970  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 9862 - 9910
Alignment:
Q  227 tttgactttattttattttttgttatagaagtagcttata-ataagcac 274  Q
    |||||||| ||||||||||||||||||||| || |||||| ||||||||    
T  9862 tttgacttaattttattttttgttatagaaataacttatacataagcac 9910  T

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