View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19693_low_5 (Length: 267)
Name: NF19693_low_5
Description: NF19693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19693_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 40944381 - 40944135
Alignment:
| Q |
9 |
gattatactgcatatgcattcaacacaaggcctgttgctaaacatccttgtcaaaagccctttgtttactacatgagcaaaactcattttgatactgctt |
108 |
Q |
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| T |
40944381 |
gattatactgcatatgcattcaacacaaggcctgttgctaaacatccttgtcaaaagccctttgtttactacatgagcaaaactcattttgatactgctt |
40944282 |
T |
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| Q |
109 |
ctagacaaattgttggtgtttattctcgtgaccaaactaagagtcctttttgccggtggagaatggaatcacctgagaaaattacttccatcgttgtcac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944281 |
ctagacaaattgttggtgtttattctcgtgaccaaactaagagtcctttttgccggtggagaatggaatcacctgagaaaattacttccatcgttgtcac |
40944182 |
T |
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| Q |
209 |
aaaaagacgcgatcctttgcgctggaaaaaggtaaggttgctcataa |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944181 |
aaaaagacgcgatcctttgcgctggaaaaaggtaaggttgctcataa |
40944135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 40918658 - 40918583
Alignment:
| Q |
21 |
tatgcattcaacacaaggcctgttgctaaacatccttgtcaaaagccctttgtttactacatgagcaaaactcatt |
96 |
Q |
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|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40918658 |
tatgcattcaacactagccttgttgctaaacatccttgtcaaaagccctttgtttactacatgagtaaaactcatt |
40918583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22775633 - 22775581
Alignment:
| Q |
9 |
gattatactgcatatgcattcaacacaaggcctgttgctaaacatccttgtca |
61 |
Q |
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||||| ||||| ||||||||||||||||||||||| | ||||| |||||||| |
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| T |
22775633 |
gattacactgcttatgcattcaacacaaggcctgtaaccaaacacccttgtca |
22775581 |
T |
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