View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19694_high_10 (Length: 222)
Name: NF19694_high_10
Description: NF19694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19694_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33344949 - 33345169
Alignment:
| Q |
1 |
tcaagtcttctcatacactccaacaattctcttgttctaaatttgatctcaatcattccttctggctcaaggacgttacctttagccgttcgctcggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33344949 |
tcaagtcttctcatacactccaacaattctcttgttctaaatttgatctcaatcattccttccggctcaaggacgttacctttagccgttcgttcggcat |
33345048 |
T |
|
| Q |
101 |
acatttcaatgtggtctgagttgattcggctgtcgacaacaacccaagccccgcctcggagttcacccatcattgggatgtatacaaatatgggctgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33345049 |
acatttcaatgtggtctgagttgattcggctgtcgacaacaacccaagccccgcctcggagttcacccatcattgggatgtatacaaatatgggctgctt |
33345148 |
T |
|
| Q |
201 |
gtatgtcctatgcttctccac |
221 |
Q |
| |
|
|||||||||| | |||||||| |
|
|
| T |
33345149 |
gtatgtcctaaggttctccac |
33345169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33319827 - 33320047
Alignment:
| Q |
1 |
tcaagtcttctcatacactccaacaattctcttgttctaaatttgatctcaatcattccttctggctcaaggacgttacctttagccgttcgctcggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||| |
|
|
| T |
33319827 |
tcaagtcttctcatacactccaacatttctcctgttctaaatttgatctcaatcattccttccggttcaagggcgttacctttagccgttcgctcagcat |
33319926 |
T |
|
| Q |
101 |
acatttcaatgtggtctgagttgattcggctgtcgacaacaacccaagccccgcctcggagttcacccatcattgggatgtatacaaatatgggctgctt |
200 |
Q |
| |
|
| ||||||| ||| |||| || ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
33319927 |
atgtttcaatatggcctgaatttattcgactgtcagcaacaacccatgccccacctcggagttcacccatcattgggatgtatacaaaaatgggttgctt |
33320026 |
T |
|
| Q |
201 |
gtatgtcctatgcttctccac |
221 |
Q |
| |
|
|||||| ||| | |||||||| |
|
|
| T |
33320027 |
gtatgttctaaggttctccac |
33320047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University