View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19694_high_3 (Length: 430)
Name: NF19694_high_3
Description: NF19694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19694_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 2892366 - 2891949
Alignment:
| Q |
1 |
tgtaacattgcagtactttggtagaaaacatggtgcccttgtagttattaaacttgacctattactagacatttttaaagtctgaacataaaaacttttg |
100 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2892366 |
tgtaacaatgcagtattttggtagaaaacatggtgcccttgtagttattaaacttgacctattactggacatttttaaagtctgaacataaaaacttttg |
2892267 |
T |
|
| Q |
101 |
tgaaaagtctctgaattgggatgagatgtagtggatttgaacattgagacctattggagattaaaatgcttcattaaaaacttttgtaataaaatatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892266 |
tgaaaagtctctgaattgggatgagatgtagtggatttgaacattgagacccattggagattaaaatgcttcattaaaaacttttgtaataaaatatgaa |
2892167 |
T |
|
| Q |
201 |
tcccaatcattgtatactat-----acaaggaaggaagcccttgtaatttggagatgtgattaaaaaatgatgatgagcatgctgatagcaacaccattg |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
2892166 |
tcccaatcattgtatactatacaatacaaggaaggaagcccttgtaatttggagatgtgattcataaattatgatgagcatgctgatagcaacaccattg |
2892067 |
T |
|
| Q |
296 |
aggtgatcaaataccccatttaagatcctaaactgcaaaaagagaaaatcatggttgcaagagatgagcattcttcttcggtactcattcatattgagcc |
395 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2892066 |
aggtgatcaaataccccatttgagatcctaaaccgcaaaaagagaaaatcatagttgcaagaggtgagcattcttcttcggtactcattcatattgagcc |
2891967 |
T |
|
| Q |
396 |
aagagcataccacatcga |
413 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
2891966 |
aagagcataccacatcga |
2891949 |
T |
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