View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19694_high_4 (Length: 419)
Name: NF19694_high_4
Description: NF19694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19694_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 11194294 - 11193890
Alignment:
| Q |
1 |
cgaggaaagctcccatcattggttccaactagcattatccaagcaccatgaattaactt-----------ccttcatcttctagagacttttcctgtata |
89 |
Q |
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||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11194294 |
cgagggaaactcccatgattggttccaactagcattatccaagtaccatgaattaacttgaaagtccatgccttcatcttctagagacttttcctgtata |
11194195 |
T |
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| Q |
90 |
gtgtatgtcaattccttgcattttatgtctttagcttcatattcttttatcttgtccggttgatcacttatgaccacaaacacatcagcattagcagcaa |
189 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11194194 |
gtgtatgtcaattccttgcattttacgtcttgagcttcatattcttttatcttgtccggttgatcacttatgaccacaaacacatcagcattagcagcaa |
11194095 |
T |
|
| Q |
190 |
aattccaagtgccgtacttaggaggtaaagtcttccatttgagtagaattgttggaacagaaatacttcccttatcaatcatttttcggtgtagaacagc |
289 |
Q |
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| T |
11194094 |
aattccaagtgccgtacttaggaggtaaagtcttccatttaagtagaattgttggaacagaaatacttcccttatcaatcatttttcggtgtagaacagc |
11193995 |
T |
|
| Q |
290 |
cacaacatactgattttgacattcagacatattcacatatttgaagtaattttcatgatacactctatcatcacgactttctttctccaaactaacatct |
389 |
Q |
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| T |
11193994 |
ca-------------gtgacattcagacatattcacatatttgaagtaattttcatgatacactctatcatcacgactttctttctccaaactaacatct |
11193908 |
T |
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| Q |
390 |
tcaaagcttatatatatt |
407 |
Q |
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| T |
11193907 |
tcaaagcttatatatatt |
11193890 |
T |
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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 39798338 - 39798401
Alignment:
| Q |
92 |
gtatgtcaattccttgcattttatgtctttagcttcatattcttttatcttgtccggttgatca |
155 |
Q |
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| T |
39798338 |
gtatgccaattccttgcattttatgtcttgagcttcatattcttttatcttgtcccgttgatca |
39798401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 1639314 - 1639354
Alignment:
| Q |
206 |
cttaggaggtaaagtcttccatttgagtagaattgttggaa |
246 |
Q |
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| T |
1639314 |
cttaggaggaaaagtcttccatttgagtagacttgttggaa |
1639354 |
T |
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