View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19694_low_5 (Length: 374)
Name: NF19694_low_5
Description: NF19694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19694_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 9370774 - 9371118
Alignment:
| Q |
13 |
aaaatcaataatcctcaaaccctttaaaatattattcacaacaaaatatgtcacatcacagaatctatcatagagatgcaaatgtattatttaattgaca |
112 |
Q |
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| T |
9370774 |
aaaattaataatcctcaaacccattaaaatattattcacaacaaaatatgtcacatcacagaatctatcatagagatgcaaatgtattatttaattgaca |
9370873 |
T |
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| Q |
113 |
tgccaaccaattaaacttatgtatctcacatggtatttctatgttagtgtgccctttctctaatgtttctattattattcctataagtattattataaac |
212 |
Q |
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| T |
9370874 |
tgccaaccaattaaacttatgtatctcacatggtatttctatgttagtgtgccctttctctaatgtttctattattattcctataagtattattataaac |
9370973 |
T |
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| Q |
213 |
ttcaaaagaatccaagaaaatttgttacaaacatccgtctgatttgcattggttatattggtcggtgtggggaccaaattgtagaattattctttgagtt |
312 |
Q |
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| T |
9370974 |
ttcaaaagaatccaataaaatttgttacaaacatccgtctgatttgcattggttatattggtcggtgtggggaccaaattgtagaattattctttgagtt |
9371073 |
T |
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| Q |
313 |
ttggtatctctgttccaaaaatctactcaggaatccacgtactat |
357 |
Q |
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| T |
9371074 |
ttggtatctctgttccagaaatctactcaggaatccacgtactat |
9371118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 33820319 - 33820277
Alignment:
| Q |
237 |
ttacaaacatccgtctgatttgcattggttatattggtcggtg |
279 |
Q |
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| T |
33820319 |
ttacaaacatccgtctgatttgcgttggttatattggtcggtg |
33820277 |
T |
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