View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19694_low_6 (Length: 327)

Name: NF19694_low_6

Description: NF19694

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19694_low_6

[»] scaffold0062 (1 HSPs)

Target: scaffold0062 (Bit Score: 165; Significance: 3e-88; HSPs: 1)

Name: scaffold0062

Description:

Target: scaffold0062; HSP #1

Raw Score: 165; E-Value: 3e-88

Query Start/End: Original strand, 16 - 310

Target Start/End: Original strand, 4765 - 5058

Alignment:

Q	16	ataacatcagaaatgttaggaatactcatactctctctaacattaacttttttacggg-tgaaatctatctggttcttgtcatgtgtttagggtagatgt	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4765	ataacatgagaaatgttaggaataatcatactctctctaacattaacttttttacggggtgaaatctatctggttcttgtcatgtgtttagggtagatgt	4864	T

Q	115	ttaatnnnnnnnnnnnnnttactacaaaagaaattagaagtaggccaagagttgagactcagtcnnnnnnnnnnnnnnnnnntaagaatacacagtgttt	214	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4865	ttaataaaaaaaattaa-ttactacaaaagaaattagaagtaggctaagagttgagacccagtcaaaagaaaaaaataaaa-taagaatacacagtgttt	4962	T

Q	215	gtacccaaaaatgatcatgaataaagaataggcaaatgtacacacaattaattaaaaattaagtcaattgaattaattaaattcggatgtacatta	310	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4963	gtacccaaaaatgatcatgaataaagaataggcaaatgtacacacaattaattaaaaattaactcaattgaattaattaaattcggatgtacatta	5058	T

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