View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19694_low_8 (Length: 275)

Name: NF19694_low_8
Description: NF19694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19694_low_8
NF19694_low_8
[»] chr1 (8 HSPs)
chr1 (4-259)||(28496379-28496635)
chr1 (126-257)||(50789091-50789222)
chr1 (165-257)||(36989102-36989194)
chr1 (128-256)||(42286842-42286970)
chr1 (126-256)||(12774660-12774790)
chr1 (126-256)||(12804784-12804914)
chr1 (172-253)||(4160143-4160224)
chr1 (175-259)||(31644331-31644415)
[»] chr7 (1 HSPs)
chr7 (125-259)||(40749112-40749246)
[»] chr8 (2 HSPs)
chr8 (177-253)||(33186509-33186585)
chr8 (174-250)||(5789002-5789078)
[»] chr2 (1 HSPs)
chr2 (165-256)||(42898060-42898151)
[»] chr4 (1 HSPs)
chr4 (156-245)||(30518432-30518521)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 28496635 - 28496379
Alignment:
Q  4 accgtgatttaattttattaaactcattgctcatccgaacatacaaaaatatatttttctatgattttcaatttgtaactttt-catatatttcaaattg 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28496635 accgtgatttaattttactaaactcattgctcatccgaacatacaaaaatatatttttctatgattttcaatttgtaactttttcatatatttcaaattg 28496536  T
Q  103 gtaatggaaattaatttgactatacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496535 gtaatggaaattaatttgactatacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatg 28496436  T
Q  203 caacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaacct 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496435 caacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaacct 28496379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 50789222 - 50789091
Alignment:
Q  126 acagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatc 225  Q
    |||||||||||||| ||||| || || || || || ||||| || |||||||||||||| || || |||||  ||||||||||||||||||||||||| |    
T  50789222 acagatccagatgcagaggtgatagcactatctcccaagaccctaatggcaacaaacaggtttatttgtgaggtatgcaacaaagggttccaaagagagc 50789123  T
Q  226 aaaaccttcaactacatagaagaggacacaac 257  Q
    |||| || || || || |||||||||||||||    
T  50789122 aaaatctacagcttcacagaagaggacacaac 50789091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 36989102 - 36989194
Alignment:
Q  165 acactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaac 257  Q
    ||||| ||||| |||||||||||| | ||||||||||| ||||| || || |||||||| ||||| |||||||| ||  ||||||||||||||    
T  36989102 acactaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgcaccgaagaggacacaac 36989194  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 42286842 - 42286970
Alignment:
Q  128 agatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaa 227  Q
    |||||||||||| || || || || || || || ||||| || ||||||||||| ||||| || |||||  | ||||| |||||||| ||||| || |||    
T  42286842 agatccagatgcagaagtgatagcactatctcccaagactctaatggcaacaaatagatttatatgtgaggtttgcaataaagggtttcaaagggagcaa 42286941  T
Q  228 aaccttcaactacatagaagaggacacaa 256  Q
    || |||||||| |||||||||||||||||    
T  42286942 aatcttcaacttcatagaagaggacacaa 42286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 12774660 - 12774790
Alignment:
Q  126 acagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatc 225  Q
    |||||||||||||| || || || || || || || ||||  || |||||||||||||||||  | |||||| | ||| | |||||||||||||| || |    
T  12774660 acagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgccaaaaagggttccaaagggagc 12774759  T
Q  226 aaaaccttcaactacatagaagaggacacaa 256  Q
    ||||  | |||||||||||||||||||||||    
T  12774760 aaaatttacaactacatagaagaggacacaa 12774790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 12804914 - 12804784
Alignment:
Q  126 acagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatc 225  Q
    |||||||||||||| ||||| || || || || || ||||| || |||||||||||||||||  | |||||| | ||  | |||||||| ||||| || |    
T  12804914 acagatccagatgcagaggtgatagcactatctccaaagaccctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaagggagc 12804815  T
Q  226 aaaaccttcaactacatagaagaggacacaa 256  Q
    ||||  | |||||||||||||||||||||||    
T  12804814 aaaatttacaactacatagaagaggacacaa 12804784  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 4160143 - 4160224
Alignment:
Q  172 tggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggaca 253  Q
    ||||||||||||| ||||| ||||| || || |||||||| || |||||||||||||| ||||| || ||||  ||||||||    
T  4160143 tggcaacaaacaggttcatttgtgagatttgtaacaaaggttttcaaagagatcaaaatcttcagcttcataagagaggaca 4160224  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 31644415 - 31644331
Alignment:
Q  175 caacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaacct 259  Q
    ||||||| |||||  | ||||| || |||||||| || || ||||||||||||||||| || |||||||| |||||||| |||||    
T  31644415 caacaaatagatttgtgtgtgagatctgcaacaagggttttcaaagagatcaaaacctacagctacataggagaggacataacct 31644331  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 40749112 - 40749246
Alignment:
Q  125 tacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagat 224  Q
    ||||||||||||||| || ||||||||||| || || ||||| || ||||| || ||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  40749112 tacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatatgcaacaaaggattccaaagagat 40749211  T
Q  225 caaaaccttcaactacatagaagaggacacaacct 259  Q
    || || ||||| || ||||||||||| ||||||||    
T  40749212 cagaatcttcagcttcatagaagaggtcacaacct 40749246  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 33186509 - 33186585
Alignment:
Q  177 acaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggaca 253  Q
    |||||||||||  | ||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||    
T  33186509 acaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggaca 33186585  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 5789078 - 5789002
Alignment:
Q  174 gcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagagg 250  Q
    |||| |||||| ||||| ||||| || |||||||||||||| |||||||||||||| |||||||| || ||||||||    
T  5789078 gcaaaaaacaggttcatatgtgagatctgcaacaaagggtttcaaagagatcaaaatcttcaacttcacagaagagg 5789002  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 42898060 - 42898151
Alignment:
Q  165 acactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacacaa 256  Q
    ||||| ||||||||||| |||||||| ||||| || || |||||||| || ||||||||||| || |||||||| |||| ||||||||||||    
T  42898060 acactgatggcaacaaatagattcatttgtgagatctgtaacaaaggatttcaaagagatcagaatcttcaacttcataaaagaggacacaa 42898151  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 30518521 - 30518432
Alignment:
Q  156 tcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacataga 245  Q
    ||||| |||||||||||||| |||||||||||| | ||||||| |||    ||||| || |||||||||||||| |||||||| ||||||    
T  30518521 tcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcataga 30518432  T

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