View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19695_high_10 (Length: 431)
Name: NF19695_high_10
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 46863459 - 46863061
Alignment:
| Q |
9 |
aatattatcttagttgaaaaaa--gtaataaaaatgatctatctatttcagttagaaatggccaaatgtcacaaaaatggaatcaccaaacacttggctg |
106 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46863459 |
aatattatcttagttgaaaaaaaagtaataaaaaggatctatctatttcagttagaaatggccaaatgtcacaaaaatggaatcaccaaacacttggctg |
46863360 |
T |
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| Q |
107 |
aacttacactattttcctttta---acttttaaccacaatgtacggtcatgcaggctcttgattggtccaaatgacttctttgaattttttgcaatgcac |
203 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46863359 |
aacttacattattttccttttactaacttttaaccacaatgtacggtcatgcaggctcttgattggtccaaatgacttctttgaattttttgcaatgcac |
46863260 |
T |
|
| Q |
204 |
cctctttgacaaattgcgggtactgattgatggcatcaggttcataggttgggttcacatcatcaagtccaacttctttcnnnnnnnnnnnnnnttcatc |
303 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
46863259 |
cctctttgacaaattgcgggcactgattgatggcat--------taggttgggttcacatcatcaagtcctacttctttcaaaaaaaaaa-----tcatc |
46863173 |
T |
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| Q |
304 |
aagtactactattatccgttgtattttaatttcgaataaatctagagctagggataaatgagaaactgacgcctccattttactaattttggtatagttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
46863172 |
aagtactactattatccgttgtattttaatttcgaataaatctagagctagggataaatgagaaactgacacctccattttactaattttggcatagttt |
46863073 |
T |
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