View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19695_high_14 (Length: 277)
Name: NF19695_high_14
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6265501 - 6265225
Alignment:
| Q |
1 |
aaattgttacttggagaagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatgcacttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6265501 |
aaattgttacttggagaagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatgcatttaa |
6265402 |
T |
|
| Q |
101 |
aaaacagtttcttcatgctagtttttgggttgaatttaatgaaatttgaattctaaagttttgatatttttatacatttcttgaatctgtagccactgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6265401 |
aaaacagtttcttcatgctagttttggtgttgaatttaatggaacttgaattctaaaattttgatatttttatacatttcttgaatctttagccactgtt |
6265302 |
T |
|
| Q |
201 |
tttggccaactttggagattggaaccactttcaccagaaaagaaagcaatgtgtcaaagagagatggaatggcttct |
277 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6265301 |
tttggccaactttggagattggaacctctgtcaccagagaagaaagcaatgtggcaaagagagatggaatggcttct |
6265225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 23783407 - 23783318
Alignment:
| Q |
4 |
ttgttacttggagaagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatg |
93 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23783407 |
ttgttacttggagaagatatgtcaggttgtggaaatggggtccctacagcgttggctatctcaaatgccataactaatctatgtggtatg |
23783318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31130743 - 31130651
Alignment:
| Q |
1 |
aaattgttacttggagaagatatgtcaggttctggaaatggggtccctacagctttggctatatctaatgccataactaatctatgtggtatg |
93 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||| ||||| || |||||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
31130743 |
aaattgttgcttggtgaagatatgtcaggttcaggaaaaggggtttgcactgctttggcaatctctaatgccattactaatctttgtggtatg |
31130651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University