View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19695_high_15 (Length: 228)
Name: NF19695_high_15
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 36203036 - 36203244
Alignment:
| Q |
16 |
caataatgatatgacttatgagaggtgcgtgtaacttataacctgnnnnnnnnnnn--cagtgagtactttttatgcattcaacttcaagtgttttaatt |
113 |
Q |
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| T |
36203036 |
caataatgatatgacttatgagaggtgcgtgtaacttataacctgtttttttttctttcagtgagtactttttatgcattcaacttcaagtgttttaatt |
36203135 |
T |
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| Q |
114 |
gtcnnnnnnnnnnnnncttcgaagtgtttaaaatagaaataaatgaagttagttatataataaaagctgttggtaggtaaaaagtatttcaaatttcata |
213 |
Q |
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||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36203136 |
gtcaaaaaaaaaaaaactttgaagtgtttaaaatataaataaatgaagttagttatataataaaagctgttggtaggtaaaaagtatttcaaatttcata |
36203235 |
T |
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| Q |
214 |
ttcatatca |
222 |
Q |
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||||||||| |
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| T |
36203236 |
ttcatatca |
36203244 |
T |
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