View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19695_high_2 (Length: 680)
Name: NF19695_high_2
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_2 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 31094309 - 31093653
Alignment:
| Q |
1 |
aatgtgatagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgatattttttaccatctttccaaaactattacagaaatgcgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
31094309 |
aatgtgatagcttcttcaaaaaatcgttgtttatagtgggagagattggtggaaatgatattttttaccatcttttcaaaactattacagaactgcaaga |
31094210 |
T |
|
| Q |
101 |
gatagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgtttaagtattggcnnnnnnnnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31094209 |
gatagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgttgaagtattggcaaaaaaaaa---- |
31094114 |
T |
|
| Q |
201 |
nngtttacttcaattgtagaactattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgta |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31094113 |
--gtttacttcaattgtagatatattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgta |
31094016 |
T |
|
| Q |
301 |
tatcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagt-aga |
399 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31094015 |
tatcaggctttaattgaagaaggagcggttgagctagtggtttcaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagtcaga |
31093916 |
T |
|
| Q |
400 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
31093915 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctaaaaaaatccatagagataataaaaca |
31093816 |
T |
|
| Q |
500 |
gaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattt |
599 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31093815 |
gaaac-accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccacaacaatatggtgcgtggagccattattt |
31093717 |
T |
|
| Q |
600 |
tctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatt |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093716 |
tctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatt |
31093653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 13003515 - 13002853
Alignment:
| Q |
1 |
aatgtgatagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgatattttttaccatctttccaaaactattacagaaatgcgaga |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||| | ||||| |
|
|
| T |
13003515 |
aatgtgacagcttcttcaaaaaatcattgtttatagtgggagagattggtggaaatgatattttttatcatctttctaaaactattaaagaactacgaga |
13003416 |
T |
|
| Q |
101 |
gatagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgtttaagtattggcnnnnnnnnnnnnn |
200 |
Q |
| |
|
|| |||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
13003415 |
gaaagttcctttgatggttgaatcaatcaaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagcaaaaaataaataa |
13003316 |
T |
|
| Q |
201 |
nngtttacttcaattgtagaactattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgta |
300 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||| |||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
13003315 |
cttttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaaatgtaatagatatttatttaattatgtt |
13003216 |
T |
|
| Q |
301 |
tatcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagt-aga |
399 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13003215 |
tgtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcaga |
13003116 |
T |
|
| Q |
400 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
13003115 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactctcattgaatactttaatgagcagctaaaaaaatccatagagacaataaaaca |
13003016 |
T |
|
| Q |
500 |
gaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattt |
599 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
13003015 |
gaaac-accctcaagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacaccacaacaatatggtgtgtggagcaattattt |
13002917 |
T |
|
| Q |
600 |
tctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatt |
663 |
Q |
| |
|
||||||| |||||| |||| |||| || || |||||||||||| ||||||||||| |||||||| |
|
|
| T |
13002916 |
tctttccttgttaactttttattgtttaattcttatcaaatttgtttgatcccattcactaatt |
13002853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Original strand, 31252071 - 31252733
Alignment:
| Q |
1 |
aatgtgatagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgatattttttaccatctttccaaaactattacagaaatgcgaga |
100 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||| |
|
|
| T |
31252071 |
aatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactacgaga |
31252170 |
T |
|
| Q |
101 |
gatagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgtttaagtattggcnnnnnnnnnnnnn |
200 |
Q |
| |
|
|| |||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
31252171 |
gaaagttcctttgatggttgaatcaatcaaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagcaaaaaataaataa |
31252270 |
T |
|
| Q |
201 |
nngtttacttcaattgtagaactattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgta |
300 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
31252271 |
cttttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatggatatttatttaattatgtt |
31252370 |
T |
|
| Q |
301 |
tatcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagt-aga |
399 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31252371 |
tgtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcaga |
31252470 |
T |
|
| Q |
400 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaaca |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
31252471 |
agaaagaagactatgatgaatttggatgtttgatagcttacaacactctcattgaatactttaatgagcagctaaaaaaatccatagagacaataaaaca |
31252570 |
T |
|
| Q |
500 |
gaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattt |
599 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
31252571 |
gaaac-accctcaagctaagatagtatattttgattattacaacgatgccaagcgtttatatcaaacacctcaacagtatggtgtgtggagcaattattt |
31252669 |
T |
|
| Q |
600 |
tctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatt |
663 |
Q |
| |
|
||||||| |||||| |||| |||| ||||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
31252670 |
tctttccttgttaactttttattgttttattcttatcaaatttgtttgatcccattcactaatt |
31252733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 269 - 654
Target Start/End: Original strand, 16163029 - 16163414
Alignment:
| Q |
269 |
aaaaaagtaatagagatttatttaattatgtatatcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaa |
368 |
Q |
| |
|
||||| ||||||| ||||||||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||| || ||||| |
|
|
| T |
16163029 |
aaaaatgtaatagtgatttatttaatttttcttatcaggcattaattgaagaaggagcggttgagctagtggttccaggtaactttccaatgggatgtaa |
16163128 |
T |
|
| Q |
369 |
tactgacatattgtcaaaaaagattag-tagaagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgag |
467 |
Q |
| |
|
| |||||||||| ||||||||||||| | |||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16163129 |
tgttgacatattgacaaaaaagattagccaaaagaaagaggattatgatgaatttggatgtttaatagcttacaactctttcatcgaatactttaatgag |
16163228 |
T |
|
| Q |
468 |
cagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagca |
567 |
Q |
| |
|
|| || ||| |||||| | || ||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16163229 |
caactaaaaaaatccatagagacattacggcagaaac-atcctcaagctaagataatatattttgactactacaacgatgccaaacgtttatatgaagca |
16163327 |
T |
|
| Q |
568 |
ccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccat |
654 |
Q |
| |
|
|| |||||||||||| ||||||| |||||||| |||| |||||||||| |||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
16163328 |
ccacaacaatatggtctgtggagcaattattttacttccttgttaagtttacatttatttattcttgacaaatttatttgatcccat |
16163414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 266 - 661
Target Start/End: Original strand, 27206363 - 27206754
Alignment:
| Q |
266 |
tggaaaaaagtaatagagatttatttaattatgtatatcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtg |
365 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||| |||| ||| | ||| || ||| ||||| |||||||| || |
|
|
| T |
27206363 |
tggaaaaatgtaatagtcatttatttaattttgtttcacaggctttaattgaagaaggagcggtagagttggtggttttagggaacttcccaataggatg |
27206462 |
T |
|
| Q |
366 |
taatactgacatattgtcaaaaaagattagt-agaagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaat |
464 |
Q |
| |
|
|| | || || |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
27206463 |
tactgctcacttattgtcaaataagattagtcagaagaaagaagactatgataaatttggatgtttgatagcatacaactctttcataaaatactttaat |
27206562 |
T |
|
| Q |
465 |
--gagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatc |
562 |
Q |
| |
|
| | || ||| || ||| | ||| || |||| |||||||||||||||||||||| |||||| |||||| |||| |||||||||||| | |
|
|
| T |
27206563 |
aaaaaaaacttaaaaaatccataaagacactaaggcataaac-accctcaagctaagatagtatactttgacgtttacaatgatgtcaaacgtttatacc |
27206661 |
T |
|
| Q |
563 |
aagcaccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaa |
661 |
Q |
| |
|
||||||| |||||||||| | ||||||| |||||||||||||| || |||| ||||||| ||| ||| ||||||||||||| | ||||||||||| |
|
|
| T |
27206662 |
aagcaccagaacaatatgg-gtgtggagcaattattttctttcc-tg----gtttacattgatctattcttgtcaaatttatttgtttccatgcactaa |
27206754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 27206134 - 27206305
Alignment:
| Q |
1 |
aatgtgatagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgatattttttaccatctttccaaaactattacagaaatgcgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||| |||| | | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
27206134 |
aatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggtagaaatgacgttttattcgatctttctaaaactattacagaactgcgaga |
27206233 |
T |
|
| Q |
101 |
gatagttcccttgatagttgattcaa-tcaaaaataccaccattgtatgttatacaaaacttaagtaattaa |
171 |
Q |
| |
|
||| ||||||||||| ||||| |||| | ||||||||||||| |||||||||||| ||| ||||| |||||| |
|
|
| T |
27206234 |
gatggttcccttgatcgttgagtcaattaaaaaataccaccaatgtatgttataccaaatttaagcaattaa |
27206305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 203 - 469
Target Start/End: Original strand, 27228962 - 27229227
Alignment:
| Q |
203 |
gtttacttcaattgtagaactattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgtata |
302 |
Q |
| |
|
|||| ||||||||||| || ||| | |||||||||||| |||| | ||||||||| | ||||||| ||| |||||| ||||| |||||||||| | |
|
|
| T |
27228962 |
gttttcttcaattgtataataattctttttgagttatag--attagtgaataaataataatcttggataaatataatagtcatttaattaattatgtttt |
27229059 |
T |
|
| Q |
303 |
tcaggctttaattgaagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagt-agaag |
401 |
Q |
| |
|
|||| || |||||||||||| | | || |||||| ||||||||||||||||||||||||||||| | |||||||| | || |||| ||||| |
|
|
| T |
27229060 |
ctaggcattgattgaagaaggagcaatagaactagtggttccaggaaactttccaatagggtgtaatgtcggcatattgtggagggtgaatagtcagaag |
27229159 |
T |
|
| Q |
402 |
aaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagca |
469 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
27229160 |
aaagaagattatgatgaatttggatgtttgataacttacaacactttcatcgaatactataatgagca |
27229227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 16162794 - 16162969
Alignment:
| Q |
3 |
tgtgatagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgatattttttaccatctttccaaaactattacagaaatgcgagaga |
102 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| |||| ||||||||||||||| |||||| ||| |||| ||||||||||||||| ||||||| | |
|
|
| T |
16162794 |
tgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaatgatgtttttttacatatttctaaaactattacagaactgcgagaaa |
16162893 |
T |
|
| Q |
103 |
tagttcccttgatagttgattcaatcaaaaataccaccattgtatgttatacaaaacttaagtaattaaatgttta |
178 |
Q |
| |
|
| ||||||||||| ||||| ||||| | || ||||||| |||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
16162894 |
ttgttcccttgattgttgaatcaattacgaagaccaccaatgtaggttatatcaaatttaagtaattaaatgttta |
16162969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 25658493 - 25658759
Alignment:
| Q |
317 |
aagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagta-gaagaaagaagactatga |
415 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||| | ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
25658493 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgtgttgacaaatttgattagtacgaagaaagaagactatga |
25658592 |
T |
|
| Q |
416 |
tgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagc |
515 |
Q |
| |
|
|||| |||| || ||||||||||||| ||||| |||||||| ||||| || || || |||||| | ||| ||| ||| | ||||||||| |
|
|
| T |
25658593 |
tgaacttgggtgcctgatagcttacaatgctttcgccgaatactacaatgaacaacttaaaaattctatagagacattaagacataaata-ccctcaagc |
25658691 |
T |
|
| Q |
516 |
taagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||||||||| |||| || |||||||||| |
|
|
| T |
25658692 |
taagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg |
25658759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 25664898 - 25665164
Alignment:
| Q |
317 |
aagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagta-gaagaaagaagactatga |
415 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||| | ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
25664898 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgtgttgacaaatttgattagtacgaagaaagaagactatga |
25664997 |
T |
|
| Q |
416 |
tgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagc |
515 |
Q |
| |
|
|||| |||| || ||||||||||||| ||||| |||||||| ||||| || || || |||||| | ||| ||| ||| | ||||||||| |
|
|
| T |
25664998 |
tgaacttgggtgcctgatagcttacaatgctttcgccgaatactacaatgaacaacttaaaaattctatagagacattaagacataaata-ccctcaagc |
25665096 |
T |
|
| Q |
516 |
taagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||||||||| |||| || |||||||||| |
|
|
| T |
25665097 |
taagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg |
25665164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 25671303 - 25671569
Alignment:
| Q |
317 |
aagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagta-gaagaaagaagactatga |
415 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||| | ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
25671303 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgtgttgacaaatttgattagtacgaagaaagaagactatga |
25671402 |
T |
|
| Q |
416 |
tgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagc |
515 |
Q |
| |
|
|||| |||| || ||||||||||||| ||||| |||||||| ||||| || || || |||||| | ||| ||| ||| | ||||||||| |
|
|
| T |
25671403 |
tgaacttgggtgcctgatagcttacaatgctttcgccgaatactacaatgaacaacttaaaaattctatagagacattaagacataaata-ccctcaagc |
25671501 |
T |
|
| Q |
516 |
taagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||||||||| |||| || |||||||||| |
|
|
| T |
25671502 |
taagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg |
25671569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 25677708 - 25677974
Alignment:
| Q |
317 |
aagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagta-gaagaaagaagactatga |
415 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||| | ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
25677708 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgtgttgacaaatttgattagtacgaagaaagaagactatga |
25677807 |
T |
|
| Q |
416 |
tgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagc |
515 |
Q |
| |
|
|||| |||| || ||||||||||||| ||||| |||||||| ||||| || || || |||||| | ||| ||| ||| | ||||||||| |
|
|
| T |
25677808 |
tgaacttgggtgcctgatagcttacaatgctttcgccgaatactacaatgaacaacttaaaaattctatagagacattaagacataaata-ccctcaagc |
25677906 |
T |
|
| Q |
516 |
taagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||||||||| |||| || |||||||||| |
|
|
| T |
25677907 |
taagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg |
25677974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 583
Target Start/End: Original strand, 25684384 - 25684650
Alignment:
| Q |
317 |
aagaaggatcggttgagctagtgattccaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagta-gaagaaagaagactatga |
415 |
Q |
| |
|
|||||||| | || |||||||||||||| |||||||||||||| ||||||||| ||| | ||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
25684384 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaatgctggtgtgttgacaaatttgattagtacgaagaaagaagactatga |
25684483 |
T |
|
| Q |
416 |
tgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagc |
515 |
Q |
| |
|
|||| |||| || ||||||||||||| ||||| |||||||| ||||| || || || |||||| | ||| ||| ||| | ||||||||| |
|
|
| T |
25684484 |
tgaacttgggtgcctgatagcttacaatgctttcgccgaatactacaatgaacaacttaaaaattctatagagacattaagacataaata-ccctcaagc |
25684582 |
T |
|
| Q |
516 |
taagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
||||||| ||||||||||||| |||||| || |||||||||||||||| |||| || |||||||||| |
|
|
| T |
25684583 |
taagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg |
25684650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25658206 - 25658257
Alignment:
| Q |
8 |
tagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgat |
59 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25658206 |
tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25658257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25664611 - 25664662
Alignment:
| Q |
8 |
tagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgat |
59 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25664611 |
tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25664662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25671016 - 25671067
Alignment:
| Q |
8 |
tagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgat |
59 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25671016 |
tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25671067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25677421 - 25677472
Alignment:
| Q |
8 |
tagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgat |
59 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25677421 |
tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25677472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 25684095 - 25684146
Alignment:
| Q |
8 |
tagcttcttcaaaaaatagttgtttatagtgtgagagattggtggaaatgat |
59 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25684095 |
tagctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25684146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 399 - 583
Target Start/End: Complemental strand, 33120792 - 33120609
Alignment:
| Q |
399 |
aagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| | ||| |||| |||||||||| ||| || || |||||| | ||| || |
|
|
| T |
33120792 |
aagaaagaagactatgatgaatttgggtgcttaatagcttacaataatttagtcgagtactttaatgggcaactaaaaaattctatagagacactaagac |
33120693 |
T |
|
| Q |
499 |
agaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
|||| || |||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33120692 |
agaagca-ccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
33120609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 399 - 583
Target Start/End: Complemental strand, 33130535 - 33130352
Alignment:
| Q |
399 |
aagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| | ||| |||| |||||||||| ||| || || |||||| | ||| || |
|
|
| T |
33130535 |
aagaaagaagactatgatgaatttgggtgcttaatagcttacaataatttagtcgagtactttaatgggcaactaaaaaattctatagagacactaagac |
33130436 |
T |
|
| Q |
499 |
agaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
|||| || |||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33130435 |
agaagca-ccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
33130352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 19112443 - 19112509
Alignment:
| Q |
517 |
aagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
|||||| ||||||||||||| ||||| | ||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
19112443 |
aagataatatattttgactactacaatgctgccaaacgtttatacgaagcaccagaacaatacggtg |
19112509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 578
Target Start/End: Original strand, 19117257 - 19117318
Alignment:
| Q |
517 |
aagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaata |
578 |
Q |
| |
|
|||||| ||||||||||||| ||||| | ||||||||||||||| ||||||| ||||||| |
|
|
| T |
19117257 |
aagataatatattttgactactacaatgctgccaaacgtttatacgaagcaccagaacaata |
19117318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 399 - 583
Target Start/End: Complemental strand, 18547 - 18364
Alignment:
| Q |
399 |
aagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| | ||| || || |||||||| | ||| || || |||||| | ||| || |
|
|
| T |
18547 |
aagaaagaagactatgatgaatttgggtgcttaatagcttacaataatttaatagagtactttaacgggcaactaaaaaattctatagagacactaagac |
18448 |
T |
|
| Q |
499 |
agaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
|||| || |||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18447 |
agaagca-ccctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg |
18364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 583
Target Start/End: Complemental strand, 43559 - 43376
Alignment:
| Q |
399 |
aagaaagaagactatgatgaatttggatgtttgatagcttacaacactttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| | ||| || || |||||||| | ||| || || |||||| | ||| || |
|
|
| T |
43559 |
aagaaagaagactatgatgaatttgggtgcttaatagcttacaataatttaatagagtactttaacgggcaactaaaaaattctatagagacactaagac |
43460 |
T |
|
| Q |
499 |
agaaacaaccctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg |
583 |
Q |
| |
|
|||| || |||| ||| ||||||| |||| |||||||| || || ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
43459 |
agaagca-ccctgaagttaagataatatactttgactactataatgatgccaaatgtttatatcaaacaccgcaacaatatggtg |
43376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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