View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19695_high_8 (Length: 467)
Name: NF19695_high_8
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 3848921 - 3849392
Alignment:
| Q |
1 |
aaatgggttgtgcaaagatcgtaaaatttgggaaacagagggactaaaacccccaaatttaaaaaatggagtactaaattatttcagtttatattaaaat |
100 |
Q |
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| T |
3848921 |
aaatgggttgtgcaaagatcgtaaaatttgggaaacagagggactaaaacccccaaatttaaaaaatggagtactaaattatttcagtttatattaaaat |
3849020 |
T |
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| Q |
101 |
agtgacaaaaatacattaatttaagccttaatattagtattattttcctcacatttaatttgaggaaacaactccaaatgacctcgaatagggtcctaag |
200 |
Q |
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| T |
3849021 |
agtgacaaaaatacattaatttaagccttaatattagtattattttcctcacatttaatttgaggaaacaactccaaatgacctcgaatagggtcctaag |
3849120 |
T |
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| Q |
201 |
ttatacatgcaatgatatactcataattttatatgtttgttcaacaaccatatgagacaattgggaacatagtacacaaacacatgatcataaaatattg |
300 |
Q |
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| T |
3849121 |
tgatacatgcaatgatatactcataattttataagtttgttcaacaaccatatgagacagttgggaacatagtacacaaacacatgatcataaaatattg |
3849220 |
T |
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| Q |
301 |
cattgaaacgtgtgagtgttgcttttgtggtgaaaatcttttaccaaatagtttgttgactgttttattttaaac--------------------taaaa |
380 |
Q |
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| T |
3849221 |
cattgaaacgtgtgagtgttgcttttgtggtgaaaatcttttaccaaatagtttgttgactgttttattttaaactaaattatggttccgttaaataaaa |
3849320 |
T |
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| Q |
381 |
catagttttgatgacttttatacgagttgaactttcatatacgtaccctatgcatgcaatgcaacttcttct |
452 |
Q |
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| T |
3849321 |
catagttttgatgacttttatacgagttgaactttcatatacgtaccctatgcatgcaatgcaacttcttct |
3849392 |
T |
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