View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19695_high_9 (Length: 451)
Name: NF19695_high_9
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 55 - 440
Target Start/End: Original strand, 31094209 - 31094595
Alignment:
| Q |
55 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
154 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| | | |||| | ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
31094209 |
ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat |
31094308 |
T |
|
| Q |
155 |
tctgtgaactcacaagaagnnnnnnnnnngtt-gtcagtcatatagatgataagtcatttatgtcacacaaaaataacaagcaaggagttaggacaaaac |
253 |
Q |
| |
|
||||||||||||||||||| || || |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31094309 |
tctgtgaactcacaagaagaaaaaaaaagttttgttagtcatattgatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaac |
31094408 |
T |
|
| Q |
254 |
cttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggtgtagagactccactaccact |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31094409 |
cttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgagttatctttctgtggtgtagagactccactaccact |
31094508 |
T |
|
| Q |
354 |
gaaatatttgatgtcaagtgcagttgaaccggcataagcgaaatcaactcccttttttacatcaccttagctttcggtgatattctt |
440 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31094509 |
gaaatattcgatgtcaagtgcagttgaaccggcataagcgaaattaactcccttttttacatcaccttggcttttggtgatattctt |
31094595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 55 - 440
Target Start/End: Original strand, 13003415 - 13003795
Alignment:
| Q |
55 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
154 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| | |||| | ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
13003415 |
ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat |
13003514 |
T |
|
| Q |
155 |
tctgtgaactcacaagaagnnnnnnnnnngttgtcagtcatatagatgataagtcatttatgtcacacaaaaataacaagcaaggagttaggacaaaacc |
254 |
Q |
| |
|
|||||||||||| || || |||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
13003515 |
tctgtgaactcataaaaaaacaaaagtt--ttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaacc |
13003612 |
T |
|
| Q |
255 |
ttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggtgtagagactccacta---cca |
351 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||||||||||||||||| |||||| || || ||||| | |||||||||| ||| |
|
|
| T |
13003613 |
ttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatctaatga------ttcctttggtgcactgactccactaatgcca |
13003706 |
T |
|
| Q |
352 |
ctgaaatatttgatgtcaagtgcagttgaaccggcataagcgaaatcaactcccttttttacatcaccttagctttcggtgatattctt |
440 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| || | ||| |||||||||||| |
|
|
| T |
13003707 |
ctaaaatatttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatctgggattttggtgatattctt |
13003795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 50 - 307
Target Start/End: Complemental strand, 27206239 - 27205984
Alignment:
| Q |
50 |
accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
149 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27206239 |
accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
27206140 |
T |
|
| Q |
150 |
cacattctgtgaactcacaagaagnnnnnnnnnngttgtcagtcatatagatgataagtcatttatgtcacacaaaaataacaagcaaggagttaggaca |
249 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| || | || || |||||| ||| ||||||||| | ||| |||||||||||| |
|
|
| T |
27206139 |
cacattctgtgaactcacaacaa--aacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggaca |
27206042 |
T |
|
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgca |
307 |
Q |
| |
|
||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
27206041 |
aaaccttctttagttttacacgatgagggtttaagcttcttaaaccaatcaaattgca |
27205984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 55 - 440
Target Start/End: Complemental strand, 31252171 - 31251791
Alignment:
| Q |
55 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
154 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||| |||||| | |||||||||||||| |||||| |
|
|
| T |
31252171 |
ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat |
31252072 |
T |
|
| Q |
155 |
tctgtgaactcacaagaagnnnnnnnnnngttgtcagtcatatagatgataagtcatttatgtcacacaaaaataacaagcaaggagttaggacaaaacc |
254 |
Q |
| |
|
|||||||||||| || || |||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
31252071 |
tctgtgaactcataaaaaaacaaaagtt--ttgttagtcatatagatgataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaacc |
31251974 |
T |
|
| Q |
255 |
ttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggtgtagagactccacta---cca |
351 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||||||||||||||| ||||||| || || ||||| | |||||||||| ||| |
|
|
| T |
31251973 |
ttctttacttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatga------ttcctttggtgcactgactccactaatgcca |
31251880 |
T |
|
| Q |
352 |
ctgaaatatttgatgtcaagtgcagttgaaccggcataagcgaaatcaactcccttttttacatcaccttagctttcggtgatattctt |
440 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||| || | ||| |||||||||||| |
|
|
| T |
31251879 |
ctaaaatatttgacatcaagtgcagttgaaccggcataggcgaaattaactcccttttttatatcatctgggattttggtgatattctt |
31251791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 27228810 - 27228709
Alignment:
| Q |
221 |
acaaaaataacaagcaaggagttaggacaaaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaatt |
320 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||||||||| ||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||| || |
|
|
| T |
27228810 |
acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatgagtt |
27228711 |
T |
|
| Q |
321 |
at |
322 |
Q |
| |
|
|| |
|
|
| T |
27228710 |
at |
27228709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 27205953 - 27205869
Alignment:
| Q |
353 |
tgaaatatttgatgtcaagtgcagttgaaccggcataagcgaaatcaactcccttttttacatcaccttagctttcggtgatatt |
437 |
Q |
| |
|
||||||| |||| ||||||||||||| |||| ||||||| |||| ||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
27205953 |
tgaaataattgacatcaagtgcagttgcaccgccataagcaaaattaactcccttttttacatcatcttgacttttggtgatatt |
27205869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 16162699 - 16162640
Alignment:
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcaca |
309 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | || |||||||| |||||||||||| |
|
|
| T |
16162699 |
aaaccttctttgcttttacacaataagggtttttgatttttaaaccagtcaaattgcaca |
16162640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
| Q |
56 |
tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt |
155 |
Q |
| |
|
||||||| |||||||||||||||||||| || || ||||| | ||||| |||||| |||||||||| ||| || || |||||||||||||||||| | |
|
|
| T |
16162891 |
tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact |
16162792 |
T |
|
| Q |
156 |
ctgt |
159 |
Q |
| |
|
|||| |
|
|
| T |
16162791 |
ctgt |
16162788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27206484 - 27206427
Alignment:
| Q |
1 |
atttgacaataagtgagcagtacaccctattgaaaatttccctgaaaccaccaactct |
58 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||| |||||||||||||| |
|
|
| T |
27206484 |
atttgacaataagtgagcagtacatcctattgggaagttccctaaaaccaccaactct |
27206427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 25664516 - 25664433
Alignment:
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggt |
333 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| ||||||||||| |||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
25664516 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggt |
25664433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 25670921 - 25670838
Alignment:
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggt |
333 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| ||||||||||| |||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
25670921 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggt |
25670838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 25677326 - 25677243
Alignment:
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggt |
333 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| ||||||||||| |||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
25677326 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggt |
25677243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 25684000 - 25683917
Alignment:
| Q |
250 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgaattatctttctgtggt |
333 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| ||||||||||| |||||||||||| | ||||||| |||| | |||||| |
|
|
| T |
25684000 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaatgaatgatctgtttgtggt |
25683917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University