View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19695_low_1 (Length: 958)

Name: NF19695_low_1
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19695_low_1
NF19695_low_1
[»] chr3 (60 HSPs)
chr3 (324-889)||(27995090-27995655)
chr3 (20-308)||(27995640-27995932)
chr3 (840-950)||(28477005-28477115)
chr3 (783-958)||(27956572-27956739)
chr3 (49-266)||(28099545-28099752)
chr3 (607-788)||(28076154-28076329)
chr3 (497-586)||(27905528-27905615)
chr3 (630-777)||(28476120-28476278)
chr3 (332-412)||(27905680-27905760)
chr3 (209-308)||(28175189-28175290)
chr3 (209-308)||(28076589-28076684)
chr3 (324-427)||(27949614-27949717)
chr3 (209-308)||(28156144-28156245)
chr3 (622-688)||(28476788-28476854)
chr3 (615-760)||(17752501-17752640)
chr3 (615-760)||(19053821-19053960)
chr3 (216-307)||(11405687-11405779)
chr3 (324-419)||(28044002-28044097)
chr3 (479-588)||(17752350-17752459)
chr3 (479-588)||(19053670-19053779)
chr3 (20-142)||(28516101-28516223)
chr3 (388-453)||(28500948-28501013)
chr3 (368-440)||(11405578-11405650)
chr3 (607-688)||(27905405-27905490)
chr3 (607-671)||(28126984-28127052)
chr3 (607-671)||(28140917-28140985)
chr3 (683-781)||(27956761-27956858)
chr3 (607-670)||(28475348-28475415)
chr3 (607-686)||(28516430-28516513)
chr3 (635-760)||(28174814-28174933)
chr3 (488-556)||(28501031-28501097)
chr3 (783-885)||(28476304-28476399)
chr3 (840-889)||(27905222-27905271)
chr3 (510-586)||(28140479-28140553)
chr3 (388-453)||(28475878-28475943)
chr3 (75-168)||(28175436-28175533)
chr3 (841-889)||(28475581-28475629)
chr3 (505-583)||(28076345-28076426)
chr3 (252-306)||(28475804-28475862)
chr3 (252-305)||(28500879-28500931)
chr3 (32-104)||(27960361-27960433)
chr3 (740-788)||(28140314-28140362)
chr3 (83-146)||(28044272-28044335)
chr3 (69-124)||(28500592-28500647)
chr3 (848-890)||(8543209-8543251)
chr3 (209-267)||(17751946-17752004)
chr3 (209-267)||(19053266-19053324)
chr3 (257-302)||(28044088-28044134)
chr3 (396-453)||(28076502-28076559)
chr3 (607-678)||(28140364-28140441)
chr3 (479-528)||(28475980-28476029)
chr3 (739-788)||(28476921-28476970)
chr3 (840-889)||(28504221-28504272)
chr3 (847-889)||(8541536-8541578)
chr3 (607-671)||(28126703-28126773)
chr3 (727-788)||(28173215-28173279)
chr3 (750-788)||(28475477-28475515)
chr3 (847-889)||(28516588-28516630)
chr3 (275-308)||(8540671-8540704)
chr3 (412-453)||(8542456-8542497)
[»] chr4 (3 HSPs)
chr4 (505-583)||(9392809-9392886)
chr4 (623-670)||(9393019-9393066)
chr4 (216-277)||(9392245-9392308)
[»] scaffold0067 (2 HSPs)
scaffold0067 (216-307)||(20858-20950)
scaffold0067 (368-440)||(20749-20821)
[»] chr7 (2 HSPs)
chr7 (209-283)||(8697289-8697361)
chr7 (610-664)||(8697444-8697498)


Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 324 - 889
Target Start/End: Complemental strand, 27995655 - 27995090
Alignment:
Q  324 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaatcag 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  27995655 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatgattaaattgactgcttatgatattttttaagattttgacttggaatcag 27995556  T
Q  424 gctttaaggtttaagcttcagtttgaaaagcnnnnnnnttcttatagataaactgtgtttgatcctatccttgtcaactcgagttggtttctctaaaaga 523  Q
    |||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27995555 gcttcaaggtttaagcttcagtttgaaaagcaaaaaaattcttatagataaactgtgtttgatcctatccttgtcaactcgagttggtttctctaaaaga 27995456  T
Q  524 taatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaatctaaacccttgtaaacttggtccctgaaaattgttaaaat 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27995455 taatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaatctaaacccttgtaaacttggtccctgaaaattgttaaaat 27995356  T
Q  624 atgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagcagcatcaagatcataaat 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27995355 atgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagcagcatcaatatcataaat 27995256  T
Q  724 aaggtagtgttgactacaactctcctgtagaaatatactttggaggtttaattttggtacaacaattttagaaaagttacttttatctttgaaagtgtgc 823  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27995255 aaggtagtgttgactacaactcttctgtagaaatatactttggaggtttaattttggtacaacaattttagaaaagttacttttatctttgaaagtgtgc 27995156  T
Q  824 agtaatccatgcccagcaaactgtatatgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27995155 agtaatccatggccagcaaactgtatatgaatgaatgatcaagcaaaatgagattgttatttacct 27995090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 27995932 - 27995640
Alignment:
Q  20 gtcagcacatgattttgaacaatcttttcctttataggtagaaggcaaaagctagaatctagagaattaggagtagtatttactgcgatccatgttctgc 119  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| | ||||||||| ||||||||||||    
T  27995932 gtcagctcataattttgaacaatcttttcctttataggtagaaggcaaaagctagaat--------ttaggagtactgtttactgcggtccatgttctgc 27995841  T
Q  120 agcaaataaaagctgcagtggcaataatacaaaattgttggggtttggc------------tgccatgttgcatagttgcaacttattaagtaataactg 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| | ||    
T  27995840 agcaaataaaagctgcaggggcaataatacaaaattgttggggtttggcattatatagttttgccatgttgcatagttgcaacttattaagtaatcaatg 27995741  T
Q  208 cttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtcagtatcaatccactgttattt 307  Q
     |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27995740 tttcatagtggatatcaaacttttttatctaatcaatttagtggctttctaaaatattgaggtttttgtaacttaagtcagtatcaatccactgttattt 27995641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 840 - 950
Target Start/End: Original strand, 28477005 - 28477115
Alignment:
Q  840 caaactgtatatgaatgaatgatcaagcaaaatgagattgttatttacctttgagattgttttcaggacattcagctcatactcaagtctcatgaacaag 939  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28477005 caaactttatatgaatgaacgatcaagcaaaatgagattgttatttacctttgagattgttttcaggacattcagctcatactcaagtttcatgaacaag 28477104  T
Q  940 aatatttaaag 950  Q
    ||| |||||||    
T  28477105 aatctttaaag 28477115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 783 - 958
Target Start/End: Complemental strand, 27956739 - 27956572
Alignment:
Q  783 caacaattttagaaaagttacttttatctttgaaagtgtgcagtaatccatgcccagcaaactgtatatgaatgaatgatcaagcaaaatgagattgtta 882  Q
    ||||||||||||||||  |||||| |||||||| |||||||||||||| |      ||||| |||||||||| |||||||||||||||||||||||||||    
T  27956739 caacaattttagaaaacctacttt-atctttgatagtgtgcagtaatcaa------gcaaagtgtatatgaaagaatgatcaagcaaaatgagattgtta 27956647  T
Q  883 tttacctttgagattgttttcaggacattcagctcatactcaagtctcatgaacaagaatatttaaaggtaaaggt 958  Q
    ||||| ||||||||||||||| | ||||||||| |||  | |||||||||||||||||||||||||||||||||||    
T  27956646 tttac-tttgagattgttttcggcacattcagcgcatgtttaagtctcatgaacaagaatatttaaaggtaaaggt 27956572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 49 - 266
Target Start/End: Complemental strand, 28099752 - 28099545
Alignment:
Q  49 ctttataggtagaaggcaaaagctagaatctagagaattaggagtagtatttactgcgatccatgttctgcagcaaataaaagctgcagtggcaataa-- 146  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||| |||||||| | || ||||||||| | |||| ||||||||||| |||||| |      
T  28099752 ctttctaggtagaaggcaacagccagaatctagagaattaggagtaatatttacttcaattcatgttctggaacaaacaaaagctgcaggggcaatgaca 28099653  T
Q  147 --tacaaaattgttggggtttggctgccatgttgcatagttgcaacttattaagtaataactgcttcatagtggatatcaaactcttttatctaatcaat 244  Q
      ||||||||||||||  ||||| |  ||              ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  28099652 attacaaaattgttggactttggatatca--------------aacttattaagtaataaatgtttcatagtggatatcaaactcttttatctaatcaat 28099567  T
Q  245 gtagtggctttctaaaatattg 266  Q
    | ||| ||||||||||||||||    
T  28099566 gcagtagctttctaaaatattg 28099545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 607 - 788
Target Start/End: Complemental strand, 28076329 - 28076154
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagca 706  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||| || ||| |         |||||||||||||||||| ||||||    
T  28076329 ctgaaatttgttaaagtatgattgtttgttaccttatttccagcagtttcagcaaattttgaagatc--------attctccaatatgcagtagctagca 28076238  T
Q  707 gcatcaagatcataaataaggtagtgttgact---acaactctcctgtagaaatatactttggaggtttaattttggtacaacaa 788  Q
     |||||||||||| |||||||| |||||||||   |||||||| |||||||||||||||||||| | |||||||| || ||||||    
T  28076237 tcatcaagatcat-aataaggtggtgttgactgcaacaactctgctgtagaaatatactttggaagcttaatttttgttcaacaa 28076154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 497 - 586
Target Start/End: Complemental strand, 27905615 - 27905528
Alignment:
Q  497 tcaactcgagttggtttctctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaatcta 586  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27905615 tcaactcgagttggtttgtctaaaagataata--caaagcataaaactcaagttgatttataaacccttgtaatactcttaaaaaatcta 27905528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 630 - 777
Target Start/End: Original strand, 28476120 - 28476278
Alignment:
Q  630 gtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctcc------------aatatgcagtatctagcagcatcaagatc 717  Q
    |||||||||||||| |||||||||||||||||||| ||||||  |||||||||||||||            ||||||||||| |||||| ||||||||||    
T  28476120 gtttgttaccttatttccagcactttcagcaaatggtcaagccatatgaacaattctcctgatatttctccaatatgcagtagctagcatcatcaagatc 28476219  T
Q  718 ataaataaggtagtgttgactacaactctcctgtagaaatatactttggaggtttaattt 777  Q
    |||| |||||||| ||| |||  |||||| |||||||||||||||||||||| |||||||    
T  28476220 ataa-taaggtagcgttcactgaaactcttctgtagaaatatactttggaggcttaattt 28476278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 27905760 - 27905680
Alignment:
Q  332 gttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttga 412  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||||||| ||||||||||    
T  27905760 gttatttcccatttgttaatgcttgaaattagatggccacttggttaaattgactgcttatgatatttttgaggattttga 27905680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 28175290 - 28175189
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtca----gtatcaatccactgtta 304  Q
    ||||||||||||||| ||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    |||||||||||||||||    
T  28175290 ttcatagtggatatcgaact--tttatttaatcaatgtagtagctttctaaaatattgaagtttttgtaacttaagtcagtatgtatcaatccactgtta 28175193  T
Q  305 tttc 308  Q
    ||||    
T  28175192 tttc 28175189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 28076684 - 28076589
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtcagtatcaatccactgttatttc 308  Q
    ||||||||||||||| ||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||    
T  28076684 ttcatagtggatatcgaact--tttatttaatcaatgtagtagctttctaaaatattgaagtttttgtaacttaagtcggtat--atccactgttatttc 28076589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 27949717 - 27949614
Alignment:
Q  324 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaatcag 423  Q
    |||||||||||||||||||||| |||||| |||||||||||  |||||  ||||||||| ||| ||||||||| |||| |||| |||||||||||| |||    
T  27949717 aatccactgttatttcccattttttaatgattgaaattagagcaccactaggttaaatttactgcttatgatacttttgaggaatttgacttggaaacag 27949618  T
Q  424 gctt 427  Q
    ||||    
T  27949617 gctt 27949614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 28156245 - 28156144
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtca----gtatcaatccactgtta 304  Q
    ||||||||||||||| ||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||    |||||||||||||||||    
T  28156245 ttcatagtggatatcgaact--tttatttaatcaatgtagtagctttctaaaatattgaagtttttgtaacttacgtcagtatgtatcaatccactgtta 28156148  T
Q  305 tttc 308  Q
    ||||    
T  28156147 tttc 28156144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 622 - 688
Target Start/End: Original strand, 28476788 - 28476854
Alignment:
Q  622 atatgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctcc 688  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  28476788 atataattgtttgttaccttatttccagcactttcagcaaatgttcaagctgtacgaacaattctcc 28476854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 615 - 760
Target Start/End: Original strand, 17752501 - 17752640
Alignment:
Q  615 tgttaaaatatgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagcagcatcaag 714  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        |  |||||||||||||||||| || | | ||| |||    
T  17752501 tgttaaagtatgattgtttgttaccttatttccagcactttcagcaaatgttcaag--------atcattctccaatatgcagtagctggaatcattaag 17752592  T
Q  715 atcataaataaggtagtgttgac---tacaactctcctgtagaaatata 760  Q
    ||||| |||||||||||||||||    |||||||| |||||||||||||    
T  17752593 atcat-aataaggtagtgttgacggtaacaactctgctgtagaaatata 17752640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 615 - 760
Target Start/End: Original strand, 19053821 - 19053960
Alignment:
Q  615 tgttaaaatatgattgtttgttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagcagcatcaag 714  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        |  |||||||||||||||||| || | | ||| |||    
T  19053821 tgttaaagtatgattgtttgttaccttatttccagcactttcagcaaatgttcaag--------atcattctccaatatgcagtagctggaatcattaag 19053912  T
Q  715 atcataaataaggtagtgttgac---tacaactctcctgtagaaatata 760  Q
    ||||| |||||||||||||||||    |||||||| |||||||||||||    
T  19053913 atcat-aataaggtagtgttgacggtaacaactctgctgtagaaatata 19053960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 11405779 - 11405687
Alignment:
Q  216 tggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtca-gtatcaatccactgttattt 307  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||| | | ||||||||| || |||||||    
T  11405779 tggatatcaaactcttttatttaatcaatgtagcagctttctaaaatattgaagtttttgtaacttaactgaggtatcaatctacagttattt 11405687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 28044097 - 28044002
Alignment:
Q  324 aatccactgttatttcccatttgttaatgcttgaaattagataaccacatggttaaattgactacttatgatattttttaggattttgacttggaa 419  Q
    |||||||||| || |||| ||| |||||| |||||||||||  |||||||||||||||||||||||||| | |||||| |||||||||| ||||||    
T  28044097 aatccactgtgatatccctttttttaatgattgaaattagagcaccacatggttaaattgactacttataacatttttgaggattttgatttggaa 28044002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 479 - 588
Target Start/End: Original strand, 17752350 - 17752459
Alignment:
Q  479 tgtttgatcctatccttgtcaactcgagttggtttc-tctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactctta 577  Q
    |||||||| |||||||| ||||||||| || ||||| ||| ||| |||||| | || |||||||||||||||||||||| |||||||||||||||||| |    
T  17752350 tgtttgattctatccttatcaactcgaatttgtttcctctgaaaaataatacagaa-gcataaaactcaagttgatttataaacccttgtaatactctaa 17752448  T
Q  578 agaaatctaaa 588  Q
    ||||| |||||    
T  17752449 agaaacctaaa 17752459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 479 - 588
Target Start/End: Original strand, 19053670 - 19053779
Alignment:
Q  479 tgtttgatcctatccttgtcaactcgagttggtttc-tctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactctta 577  Q
    |||||||| |||||||| ||||||||| || ||||| ||| ||| |||||| | || |||||||||||||||||||||| |||||||||||||||||| |    
T  19053670 tgtttgattctatccttatcaactcgaatttgtttcctctgaaaaataatacagaa-gcataaaactcaagttgatttataaacccttgtaatactctaa 19053768  T
Q  578 agaaatctaaa 588  Q
    ||||| |||||    
T  19053769 agaaacctaaa 19053779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 28516101 - 28516223
Alignment:
Q  20 gtcagcacatgattttgaacaatcttttcctttataggtagaaggcaaaagctagaatctagagaattaggagtagtatttactgcgatccatgttctgc 119  Q
    ||||||||||  |||| |||||||||||| ||| | |  || |||||  ||||||||| |||||||| ||||||| |||| ||||| || ||||||||||    
T  28516101 gtcagcacatactttttaacaatcttttcgtttctcgacagtaggcagcagctagaatttagagaatcaggagtaatattcactgcaattcatgttctgc 28516200  T
Q  120 agcaaataaaagctgcagtggca 142  Q
    |||||| ||||||||||||||||    
T  28516201 agcaaacaaaagctgcagtggca 28516223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 28500948 - 28501013
Alignment:
Q  388 cttatgatattttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 453  Q
    |||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  28500948 cttatgatatttttgaggattttgccttggaattaggcttcaaggtttaagcttcagtttgaaaag 28501013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 11405650 - 11405578
Alignment:
Q  368 ccacatggttaaattgactacttatgatattttttaggattttgacttggaatcaggctttaaggtttaagct 440  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || ||| ||||||||    
T  11405650 ccacatggttaaattgactgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagct 11405578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 607 - 688
Target Start/End: Complemental strand, 27905490 - 27905405
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcactttcagcaaatgttcaagctgtatgaacaattctcc 688  Q
    ||||||||||||||| ||||||||||||||    ||||| |||||||||||||||||||||||||||||  ||||||| |||||||    
T  27905490 ctgaaaattgttaaagtatgattgtttgttggttaccttgtctccagcactttcagcaaatgttcaagccatatgaaccattctcc 27905405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 607 - 671
Target Start/End: Complemental strand, 28127052 - 28126984
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcactttcagcaaatgttcaagc 671  Q
    ||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  28127052 ctgaaaattgttaaagtatgattgtttgttggttaccttatctccagcactttcagcaaatgttcaagc 28126984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 607 - 671
Target Start/End: Complemental strand, 28140985 - 28140917
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcactttcagcaaatgttcaagc 671  Q
    ||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  28140985 ctgaaaattgttaaagtatgattgtttgttggttaccttatctccagcactttcagcaaatgttcaagc 28140917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 683 - 781
Target Start/End: Complemental strand, 27956858 - 27956761
Alignment:
Q  683 ttctccaatatgcagtatctagcagcatcaagatcataaataaggtagtgttgactacaactctcctgtagaaatatactttggaggtttaattttggt 781  Q
    ||||||||||||||||| |||||| |||||||||||| ||| ||||||  || |||  |||||| |||||||||||||||||||||  |||||||||||    
T  27956858 ttctccaatatgcagtagctagcatcatcaagatcat-aatgaggtagccttcactgaaactcttctgtagaaatatactttggagacttaattttggt 27956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 607 - 670
Target Start/End: Original strand, 28475348 - 28475415
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcactttcagcaaatgttcaag 670  Q
    ||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  28475348 ctgaaaattgttaaagtatgattgtttgttggttaccttatctccagcactttcagcaaatgttcaag 28475415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 607 - 686
Target Start/End: Original strand, 28516430 - 28516513
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcactttcagcaaatgttcaagctgtatgaacaattct 686  Q
    |||||||| |||||| ||||||||||||||    |||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  28516430 ctgaaaatcgttaaagtatgattgtttgttggttaccttatctctagcacttccagcaaatgttcaagccgtatgaacaattct 28516513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 635 - 760
Target Start/End: Complemental strand, 28174933 - 28174814
Alignment:
Q  635 ttaccttatctccagcactttcagcaaatgttcaagctgtatgaacaattctccaatatgcagtatctagcagcatcaagatcataaataaggtagtgtt 734  Q
    ||||||||| ||||||| |||||||||||||||||| |         |||||||||||||||||| |||||| |||||||||||| |||||||| |||||    
T  28174933 ttaccttatatccagcagtttcagcaaatgttcaagatc--------attctccaatatgcagtagctagcatcatcaagatcat-aataaggtggtgtt 28174843  T
Q  735 gact---acaactctcctgtagaaatata 760  Q
    ||||   |||||||| |||||||||||||    
T  28174842 gactgcaacaactctgctgtagaaatata 28174814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 488 - 556
Target Start/End: Original strand, 28501031 - 28501097
Alignment:
Q  488 ctatccttgtcaactcgagttggtttctctaaaagataatatacaaagcataaaactcaagttgattta 556  Q
    |||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  28501031 ctatccatatcaactcgagttggtttgtctaaaagata--atacaaagcataaaactcaagttgattta 28501097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 783 - 885
Target Start/End: Original strand, 28476304 - 28476399
Alignment:
Q  783 caacaattttagaaaagttacttttatctttgaaagtgtgcagtaatccatgcccagcaaactgtatatgaatgaatgatcaagcaaaatgagattgtta 882  Q
    ||||||||||||||||  |||||| |||||||| |||||||||||||| |      || || |||||||||| |||||||||||||||||||||||||||    
T  28476304 caacaattttagaaaacctacttt-atctttgatagtgtgcagtaatcaa------gcgaagtgtatatgaaagaatgatcaagcaaaatgagattgtta 28476396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 840 - 889
Target Start/End: Complemental strand, 27905271 - 27905222
Alignment:
Q  840 caaactgtatatgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  27905271 caaactgtatatgaatgaatgatgaagcaaaatgatattgttatttacct 27905222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 510 - 586
Target Start/End: Complemental strand, 28140553 - 28140479
Alignment:
Q  510 gtttctctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaatcta 586  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||| |||||||||||||| || || ||||||||    
T  28140553 gtttgtctaaaagataataga--aagcataaaactcaagttgatttataaacccttgtaataatcgtatgaaatcta 28140479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 28475878 - 28475943
Alignment:
Q  388 cttatgatattttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 453  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||| || ||||||| ||||||||||    
T  28475878 cttatgatatttttgaggattttgccttggaatcaggcttcaagattcaagcttctgtttgaaaag 28475943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 28175533 - 28175436
Alignment:
Q  75 aatctagagaattaggagtagtatttactgcgatccatgttctgcagcaaataaaagctgcagtggcaataa----tacaaaattgttggggtttggc 168  Q
    |||| ||||||||||||||| || ||| ||| || |||||||||||||||| ||||||||||| | ||||||    |||||||||||||| |||||||    
T  28175533 aatcaagagaattaggagtaatagttattgcaattcatgttctgcagcaaacaaaagctgcagagtcaataacttttacaaaattgttggagtttggc 28175436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 841 - 889
Target Start/End: Original strand, 28475581 - 28475629
Alignment:
Q  841 aaactgtatatgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  28475581 aaactgtatatgaatgaatgatcaagaaaaatgatattgttatttacct 28475629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 505 - 583
Target Start/End: Complemental strand, 28076426 - 28076345
Alignment:
Q  505 agttggtttctctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaat----actcttaagaaat 583  Q
    ||||||||| ||||||| |||||| | ||||||||||| ||||||||||||| |||||||||||||    |||||||||||||    
T  28076426 agttggtttttctaaaaaataataca-aaagcataaaagtcaagttgatttataaacccttgtaatactcactcttaagaaat 28076345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 28475804 - 28475862
Alignment:
Q  252 ctttctaaaatattgaggtttttgtaacttaagtcag----tatcaatccactgttatt 306  Q
    |||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||    
T  28475804 ctttctaaaatattgaggcttttgtaacttaagtcagcatatatcaatccactgttatt 28475862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 28500879 - 28500931
Alignment:
Q  252 ctttctaaaatattgaggtttttgtaacttaagtcagtatcaatccactgttat 305  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  28500879 ctttctaaaatattgaggcttttgtaa-ttaagtcggtatcaatccactgttat 28500931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 27960433 - 27960361
Alignment:
Q  32 ttttgaacaatcttttcctttataggtagaaggcaaaagctagaatctagagaattaggagtagtatttactg 104  Q
    |||||||||||||||||||||  ||| || ||| |  |||||||||||||||||||||||||| |||| ||||    
T  27960433 ttttgaacaatcttttcctttcaaggcagcaggaagcagctagaatctagagaattaggagtaatattcactg 27960361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 740 - 788
Target Start/End: Complemental strand, 28140362 - 28140314
Alignment:
Q  740 caactctcctgtagaaatatactttggaggtttaattttggtacaacaa 788  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  28140362 caactctgctgtagaaatatactttggaggcttaattttggttcaacaa 28140314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 28044335 - 28044272
Alignment:
Q  83 gaattaggagtagtatttactgcgatccatgttctgcagcaaataaaagctgcagtggcaataa 146  Q
    |||| ||||||| |||| ||||| || |||||||||||| ||| ||||||||||||||||||||    
T  28044335 gaatcaggagtaatattcactgcaattcatgttctgcagaaaacaaaagctgcagtggcaataa 28044272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 28500592 - 28500647
Alignment:
Q  69 agctagaatctagagaattaggagtagtatttactgcgatccatgttctgcagcaa 124  Q
    ||||||||| |||||||||||||||| |||| ||||| || |||||||||||||||    
T  28500592 agctagaatttagagaattaggagtaatattcactgcaattcatgttctgcagcaa 28500647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 848 - 890
Target Start/End: Original strand, 8543209 - 8543251
Alignment:
Q  848 atatgaatgaatgatcaagcaaaatgagattgttatttacctt 890  Q
    ||||||||||||||||||| ||||||| |||||||||||||||    
T  8543209 atatgaatgaatgatcaagaaaaatgatattgttatttacctt 8543251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 17751946 - 17752004
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattga 267  Q
    ||||||||||||||||||||| ||||| |||| ||| || | |||||||||||||||||    
T  17751946 ttcatagtggatatcaaactcatttatttaattaatctaatagctttctaaaatattga 17752004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 19053266 - 19053324
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattga 267  Q
    ||||||||||||||||||||| ||||| |||| ||| || | |||||||||||||||||    
T  19053266 ttcatagtggatatcaaactcatttatttaattaatctaatagctttctaaaatattga 19053324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 28044134 - 28044088
Alignment:
Q  257 taaaatattgaggtttttgtaacttaagtca-gtatcaatccactgt 302  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28044134 taaaatattgaagtttttgtaacttaagtcaggtatcaatccactgt 28044088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 28076559 - 28076502
Alignment:
Q  396 attttttaggattttgacttggaatcaggctttaaggtttaagcttcagtttgaaaag 453  Q
    |||||| ||||||||||||||||| ||||||| | | ||||||||| |||||||||||    
T  28076559 atttttgaggattttgacttggaaacaggcttcaggttttaagctttagtttgaaaag 28076502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 678
Target Start/End: Complemental strand, 28140441 - 28140364
Alignment:
Q  607 ctgaaaattgttaaaatatgattgtttgtt----accttatctccagcac--tttcagcaaatgttcaagctgtatga 678  Q
    |||||||||||||||  |||||||||||||    |||||| |||||||||  ||||||||||||||||||| ||||||    
T  28140441 ctgaaaattgttaaagcatgattgtttgttggttaccttaactccagcacactttcagcaaatgttcaagccgtatga 28140364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 28475980 - 28476029
Alignment:
Q  479 tgtttgatcctatccttgtcaactcgagttggtttctctaaaagataata 528  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||||||    
T  28475980 tgtttgattctatccttatcgactcgagttggtttctctaaaaaataata 28476029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 739 - 788
Target Start/End: Original strand, 28476921 - 28476970
Alignment:
Q  739 acaactctcctgtagaaatatactttggaggtttaattttggtacaacaa 788  Q
    |||||||| | |||||||||||||||||||| ||||||||||| ||||||    
T  28476921 acaactctgcagtagaaatatactttggaggattaattttggttcaacaa 28476970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 840 - 889
Target Start/End: Original strand, 28504221 - 28504272
Alignment:
Q  840 caaactgtat--atgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    ||||||||||  ||||||||||||||||| ||||||| ||||||||||||||    
T  28504221 caaactgtatgaatgaatgaatgatcaagaaaaatgaaattgttatttacct 28504272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 889
Target Start/End: Original strand, 8541536 - 8541578
Alignment:
Q  847 tatatgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||    
T  8541536 tatatgaatgaacgatcaagaaaaatgatattgttatttacct 8541578  T

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Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 607 - 671
Target Start/End: Complemental strand, 28126773 - 28126703
Alignment:
Q  607 ctgaaaattgttaaaatatgattgttt----gttaccttatctccag--cactttcagcaaatgttcaagc 671  Q
    |||||||||||||||| ||||||||||    |||||| || ||||||  ||||||||||||||||||||||    
T  28126773 ctgaaaattgttaaaacatgattgtttgttggttaccataactccagcacactttcagcaaatgttcaagc 28126703  T

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Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 28173279 - 28173215
Alignment:
Q  727 gtagtgttgact---acaactctcctgtagaaatatactttggaggtttaattttggtacaacaa 788  Q
    ||||||||||||   |||||||| |||||||||||||||||||| | |||||||| || ||||||    
T  28173279 gtagtgttgactgcaacaactctgctgtagaaatatactttggaagcttaatttttgttcaacaa 28173215  T

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Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 750 - 788
Target Start/End: Original strand, 28475477 - 28475515
Alignment:
Q  750 gtagaaatatactttggaggtttaattttggtacaacaa 788  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  28475477 gtagaaatatactttggaggcttaattttggttcaacaa 28475515  T

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Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 889
Target Start/End: Original strand, 28516588 - 28516630
Alignment:
Q  847 tatatgaatgaatgatcaagcaaaatgagattgttatttacct 889  Q
    |||| |||||||||||||| ||||| |||||||||||||||||    
T  28516588 tatacgaatgaatgatcaatcaaaaagagattgttatttacct 28516630  T

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Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 8540671 - 8540704
Alignment:
Q  275 gtaacttaagtcagtatcaatccactgttatttc 308  Q
    |||||||||||||||||||||| |||||||||||    
T  8540671 gtaacttaagtcagtatcaatctactgttatttc 8540704  T

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Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 8542456 - 8542497
Alignment:
Q  412 acttggaatcaggctttaaggtttaagcttcagtttgaaaag 453  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  8542456 acttggaagcaggcttcaaggtttaagctttagtttgaaaag 8542497  T

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Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 505 - 583
Target Start/End: Original strand, 9392809 - 9392886
Alignment:
Q  505 agttggtttctctaaaagataatatacaaagcataaaactcaagttgatttacaaacccttgtaatactcttaagaaat 583  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9392809 agttggtttctctaaaaaataataca-aaagcataaaactcaagttgatttataaacccttgcaatactcttaagaaat 9392886  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 623 - 670
Target Start/End: Original strand, 9393019 - 9393066
Alignment:
Q  623 tatgattgtttgttaccttatctccagcactttcagcaaatgttcaag 670  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9393019 tatgattgtttgttaccttatttccagcactttcagcaaatgttcaag 9393066  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 9392245 - 9392308
Alignment:
Q  216 tggatatcaaactcttttatctaatcaatgtag--tggctttctaaaatattgaggtttttgta 277  Q
    ||||||||| |||||||||| ||||||||||||  | ||||||| |||||||||||||| ||||    
T  9392245 tggatatcagactcttttatttaatcaatgtagtatagctttctcaaatattgaggtttctgta 9392308  T

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Target: scaffold0067 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 20950 - 20858
Alignment:
Q  216 tggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaagtca-gtatcaatccactgttattt 307  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||| | | ||||||||| || |||||||    
T  20950 tggatatcaaactcttttatttaatcaatgtagcagctttctaaaatattgaagtttttgtaacttaactgaggtatcaatctacagttattt 20858  T

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Target: scaffold0067; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 20821 - 20749
Alignment:
Q  368 ccacatggttaaattgactacttatgatattttttaggattttgacttggaatcaggctttaaggtttaagct 440  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || ||| ||||||||    
T  20821 ccacatggttaaattgactgcttatgatatttttgaggattttgacttggaagcagggttcaagttttaagct 20749  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 8697289 - 8697361
Alignment:
Q  209 ttcatagtggatatcaaactcttttatctaatcaatgtagtggctttctaaaatattgaggtttttgtaacttaa 283  Q
    |||||||||||||  ||||||||  || ||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  8697289 ttcatagtggataggaaactctt--atttaatcaatgtagtagctctctaaaatattgatgtttttttaacttaa 8697361  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 610 - 664
Target Start/End: Original strand, 8697444 - 8697498
Alignment:
Q  610 aaaattgttaaaatatgattgtttgttaccttatctccagcactttcagcaaatg 664  Q
    |||||||||||| | ||||||| ||||||||| | ||||||||||||||||||||    
T  8697444 aaaattgttaaagtgtgattgtctgttaccttgtttccagcactttcagcaaatg 8697498  T

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