View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19695_low_3 (Length: 672)

Name: NF19695_low_3
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19695_low_3
NF19695_low_3
[»] chr7 (16 HSPs)
chr7 (337-648)||(25175090-25175396)
chr7 (16-180)||(43754289-43754453)
chr7 (16-180)||(48880493-48880658)
chr7 (197-331)||(43754784-43754917)
chr7 (197-321)||(43754177-43754301)
chr7 (224-321)||(48880993-48881090)
chr7 (241-331)||(48880082-48880172)
chr7 (125-180)||(43754741-43754796)
chr7 (191-232)||(48880680-48880721)
chr7 (303-339)||(24324031-24324067)
chr7 (303-339)||(27856180-27856216)
chr7 (303-339)||(19816264-19816300)
chr7 (303-339)||(22275425-22275461)
chr7 (303-339)||(24044093-24044129)
chr7 (303-339)||(34853391-34853427)
chr7 (303-339)||(42456566-42456602)
[»] chr8 (14 HSPs)
chr8 (16-340)||(37533050-37533364)
chr8 (16-180)||(41762270-41762434)
chr8 (197-331)||(37532584-37532718)
chr8 (197-331)||(41761807-41761941)
chr8 (197-331)||(41762422-41762556)
chr8 (125-180)||(41761929-41761984)
chr8 (295-339)||(4373686-4373730)
chr8 (298-339)||(39852848-39852889)
chr8 (303-339)||(11998456-11998492)
chr8 (306-340)||(38778848-38778882)
chr8 (303-341)||(43481331-43481369)
chr8 (297-337)||(35237907-35237947)
chr8 (303-339)||(40907599-40907635)
chr8 (303-339)||(43591007-43591043)
[»] chr3 (8 HSPs)
chr3 (299-340)||(19555972-19556013)
chr3 (303-339)||(48218591-48218627)
chr3 (303-338)||(50674630-50674665)
chr3 (290-339)||(44868655-44868704)
chr3 (290-339)||(55281835-55281884)
chr3 (303-339)||(25025814-25025850)
chr3 (303-339)||(29342341-29342377)
chr3 (303-339)||(41459130-41459166)
[»] chr2 (5 HSPs)
chr2 (290-339)||(16571763-16571812)
chr2 (295-339)||(4386355-4386399)
chr2 (303-339)||(6849288-6849324)
chr2 (303-339)||(16887583-16887619)
chr2 (303-339)||(28224438-28224474)
[»] chr1 (3 HSPs)
chr1 (299-344)||(7219693-7219738)
chr1 (303-340)||(8560792-8560829)
chr1 (303-340)||(42839700-42839737)
[»] chr4 (11 HSPs)
chr4 (303-341)||(26423757-26423795)
chr4 (303-340)||(389455-389492)
chr4 (303-340)||(20422130-20422167)
chr4 (306-339)||(48782127-48782160)
chr4 (303-340)||(55816500-55816537)
chr4 (303-339)||(198999-199035)
chr4 (303-339)||(20075525-20075561)
chr4 (303-339)||(32902515-32902551)
chr4 (303-339)||(36111266-36111302)
chr4 (303-339)||(40345180-40345216)
chr4 (303-339)||(52597490-52597526)
[»] chr6 (2 HSPs)
chr6 (303-339)||(6032158-6032194)
chr6 (303-339)||(12809069-12809105)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 337 - 648
Target Start/End: Complemental strand, 25175396 - 25175090
Alignment:
Q  337 accaatttgaatatgcttatgtggaaatttttatatgaatgaagggtttatgagtggtggtggagtttatctaaaatattctcattctcaccaatcaata 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25175396 accaatttgaatatgcttatgtggaaatttttatatgaatgaagggtttatgagtggtggtggagtttgtctaaaatattctcattctcaccaatcaata 25175297  T
Q  437 tataaaagtatatgatatgtagatttgttattaacataacgagtcacaattctactgtatggacaaactaaaaatggatgatgatcggaaaaatctattc 536  Q
    ||||||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  25175296 tataaaagtatatg-----tagatttgttattaacataacgagtcacaattttactgtatggacaaacttagaatggatgatgatcggaaaaatctattc 25175202  T
Q  537 tcaagaacaaatggtagggatttatcgattttgagaatggattttatgtaatgctaatcgaagttttttgagaatgaatttttccgatcatcattcattc 636  Q
    | |||||   ||| ||||  ||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  25175201 ttaagaatggatgataggagtttatcgattttgagaatgaattttgtataatgttaatcgaagttttttgagaataaattttttcgatcatcattcattc 25175102  T
Q  637 ttagtttttcta 648  Q
    ||| ||| ||||    
T  25175101 ttaatttgtcta 25175090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 43754453 - 43754289
Alignment:
Q  16 attcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggatagtt 115  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||    
T  43754453 attcaaatgggtttattgttttggtcgatgaaattgaaaaagaaggaattttttaaaaaagtgatggggtgaaagaattaatatacctaggaggatagtt 43754354  T
Q  116 gcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  43754353 gcagggtgaaagaattttgattggtgaggttggaagaattctttatgttgttatcatggatgaga 43754289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 48880493 - 48880658
Alignment:
Q  16 attcaaatgggttcattg-ttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggatagt 114  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||    
T  48880493 attcaaatgggttcattggttttggtcgatgaaattgaaaaagaaggaatttttaaaaaaagtgatggggtgaaagaattaatatacctaggaggatagt 48880592  T
Q  115 tgcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    |||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  48880593 tgcaaggtgaaagaagtttgattgctgaggttggaaaaattctttaggttgttatcatggatgaga 48880658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 43754784 - 43754917
Alignment:
Q  197 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  43754784 atcatggatgagaggttgaagacaagtaaaataatatagtgtggttagactat-gtaagatcagtgttcctctttaatctcaccataaaaattaactgtc 43754882  T
Q  297 ctatgatgggaaatgattaacctttctcatgtgaa 331  Q
    | ||| ||||||| ||||||||||| |||||||||    
T  43754883 ccatggtgggaaaagattaacctttttcatgtgaa 43754917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 43754301 - 43754177
Alignment:
Q  197 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  43754301 atcatggatgagaggttgaagacaagtaaaataatatagtatagttatactatagtaaaatcagtgttcctctttaatctcatcataaaaattaactgtc 43754202  T
Q  297 ctatgatgggaaatgattaaccttt 321  Q
    | ||| ||| ||| |||||| ||||    
T  43754201 ccatgctggaaaaagattaaacttt 43754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 48880993 - 48881090
Alignment:
Q  224 aaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatgattaaccttt 321  Q
    ||||||||||||||| |||||| |||||||| |||||||||||| ||||||  ||||||||||||||| ||||||||| ||||||| |||||||||||    
T  48880993 aaaataatatagtgtagttagattatagtaaaatcagtgttcctttttaattccaccataaaaattaactgtcctatggtgggaaaggattaaccttt 48881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 331
Target Start/End: Complemental strand, 48880172 - 48880082
Alignment:
Q  241 ttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatgattaacctttctcatgtgaa 331  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| | |||||  |||||||    
T  48880172 ttagtctatattaagatcaatgttcctctttagtctcaccataaaaattaactgtcccatgatggaaaatgattcatctttcctatgtgaa 48880082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 43754741 - 43754796
Alignment:
Q  125 aagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  43754741 aagaattttgattggtgaagttggaagaattctttgggttgttatcatggatgaga 43754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 48880680 - 48880721
Alignment:
Q  191 gaaagaatcatggatgagaggttgaagacaaataaaataata 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  48880680 gaaagaatcatggatgagaggttgaagacaagtaaaataata 48880721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 24324031 - 24324067
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24324031 tgggaaatgattaacctttcccatgtgaacacacacc 24324067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 27856180 - 27856216
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27856180 tgggaaatgattaacctttcccatgtgaacacacacc 27856216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 19816300 - 19816264
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  19816300 tgggaaaggattaacctttcccatgtgaacacacacc 19816264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 22275461 - 22275425
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||||||||||||||||||  ||||||||||||||||    
T  22275461 tgggaaatgattaaccttttccatgtgaacacacacc 22275425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 24044093 - 24044129
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  24044093 tgggaaaggattaacctttcccatgtgaacacacacc 24044129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 34853427 - 34853391
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  34853427 tgggaaaggattaacctttcccatgtgaacacacacc 34853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 42456566 - 42456602
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  42456566 tgggaaaggattaacctttcccatgtgaacacacacc 42456602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 215; Significance: 1e-117; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 37533050 - 37533364
Alignment:
Q  16 attcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggatagtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  37533050 attcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttaaaaaaagtgatagggtgaaagaattaatatacctaggaggatagtt 37533149  T
Q  116 gcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgagatgnnnnnnnngaaagaatcatggatgagaggttga 215  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||        |||||||||||||||||||||||||    
T  37533150 gcagggtgaaagaattttgattggtgagtttggaagaatt---------gttatcatggatgagatgttttttt-gaaagaatcatggatgagaggttga 37533239  T
Q  216 agacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtcctatgatgggaaatgatta 315  Q
    |||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  37533240 agacaactaaaataatatagtgtagttaaactatagtaaaatcagtgttcctctttaatctcaccataaaaattaattgtcctatggtgggaaaggatta 37533339  T
Q  316 acctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||||||||    
T  37533340 acctttcccatgtgaacacacacca 37533364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 41762270 - 41762434
Alignment:
Q  16 attcaaatgggttcattgttttggtcgatgaaattggaaaagaaggaatttttnnnnnnngtgatagggtgaaagaattaatatacctaggaggatagtt 115  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||    
T  41762270 attcaaatgggtttattgttttggtcgatgaaattgaaaaagaaggaattttttaaaaaagtgatggggtgaaagaattaatatacctaggaggatagtt 41762369  T
Q  116 gcagggtgaaagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41762370 gcagggtgaaagaattttgattggtgaggttggaagaattctttaggttgttatcatggatgaga 41762434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 37532718 - 37532584
Alignment:
Q  197 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37532718 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtt 37532619  T
Q  297 ctatgatgggaaatgattaacctttctcatgtgaa 331  Q
      ||| ||||||| |||||||||||| ||||||||    
T  37532618 tcatggtgggaaaggattaacctttcccatgtgaa 37532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 41761941 - 41761807
Alignment:
Q  197 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41761941 atcatggatgagaggttgaagacaagtaaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaactgtc 41761842  T
Q  297 ctatgatgggaaatgattaacctttctcatgtgaa 331  Q
    | ||| ||||||| |||||||||||| ||||||||    
T  41761841 ccatggtgggaaaggattaacctttcccatgtgaa 41761807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 41762422 - 41762556
Alignment:
Q  197 atcatggatgagaggttgaagacaaataaaataatatagtgtggttagactatagtaagatcagtgttcctctttaatctcaccataaaaattaattgtc 296  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  41762422 atcatggatgagaggttgaagacaagtaaaataatatagtgtagttagactatagtaaaatcagtgttcctctttaatctcaccataaaaattaactgtc 41762521  T
Q  297 ctatgatgggaaatgattaacctttctcatgtgaa 331  Q
    | ||| ||||||| |||||| ||||| ||||||||    
T  41762522 ccatggtgggaaaagattaaactttcccatgtgaa 41762556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 41761984 - 41761929
Alignment:
Q  125 aagaattttgattggtgagtttggaagaattctttaggttgttatcatggatgaga 180  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||    
T  41761984 aagaattttgattggtgaagttggaagaattctttgggttgttatcatggatgaga 41761929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 4373730 - 4373686
Alignment:
Q  295 tcctatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  4373730 tcctatgatgggaaatgattaacatttcccatgtgaacacacacc 4373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 39852848 - 39852889
Alignment:
Q  298 tatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  39852848 tatggtgggaaaggattaacctttctcatgtgaacacacacc 39852889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 11998492 - 11998456
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11998492 tgggaaatgattaacctttcccatgtgaacacacacc 11998456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 340
Target Start/End: Original strand, 38778848 - 38778882
Alignment:
Q  306 gaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||||||||||||||||||||||||| |||||    
T  38778848 gaaatgattaacctttctcatgtgaacacccacca 38778882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 43481331 - 43481369
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacaccaa 341  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  43481331 tgggaaaggattaacctttttcatgtgaacacacaccaa 43481369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 35237907 - 35237947
Alignment:
Q  297 ctatgatgggaaatgattaacctttctcatgtgaacacaca 337  Q
    ||||| ||||||| |||||||||||| ||||||||||||||    
T  35237907 ctatggtgggaaaggattaacctttcccatgtgaacacaca 35237947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 40907635 - 40907599
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  40907635 tgggaaaggattaacctttcccatgtgaacacacacc 40907599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 43591043 - 43591007
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  43591043 tgggaaaggattaacctttcccatgtgaacacacacc 43591007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 19555972 - 19556013
Alignment:
Q  299 atgatgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  19555972 atgatgggaaaggattaacctttctcatgtgaacacacacca 19556013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 48218627 - 48218591
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48218627 tgggaaaagattaacctttctcatgtgaacacacacc 48218591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 50674665 - 50674630
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacac 338  Q
    ||||||| ||||||||||||||||||||||||||||    
T  50674665 tgggaaaagattaacctttctcatgtgaacacacac 50674630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 44868655 - 44868704
Alignment:
Q  290 aattgtcctatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||| ||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  44868655 aattttcccatggtgggaaaggattaacctttcccatgtgaacacacacc 44868704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 55281884 - 55281835
Alignment:
Q  290 aattgtcctatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||| ||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  55281884 aattttcccatggtgggaaaggattaacctttcccatgtgaacacacacc 55281835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 25025814 - 25025850
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  25025814 tgggaaaggattaacctttcccatgtgaacacacacc 25025850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 29342377 - 29342341
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  29342377 tgggaaaagattaacctttcccatgtgaacacacacc 29342341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 41459166 - 41459130
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  41459166 tgggaaaggattaacctttcccatgtgaacacacacc 41459130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 16571763 - 16571812
Alignment:
Q  290 aattgtcctatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||| ||| ||||||||||| |||||||||||| ||||||||||||||||    
T  16571763 aattttcccatgatgggaaaggattaacctttcccatgtgaacacacacc 16571812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 4386399 - 4386355
Alignment:
Q  295 tcctatgatgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||||    
T  4386399 tcctatggtgggaaagtattaacctttcccatgtgaacacacacc 4386355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 6849324 - 6849288
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  6849324 tgggaaaggattaacctttcccatgtgaacacacacc 6849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 16887619 - 16887583
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  16887619 tgggaaaggattaacctttcccatgtgaacacacacc 16887583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 28224438 - 28224474
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  28224438 tgggaaaggattaacctttcccatgtgaacacacacc 28224474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 7219693 - 7219738
Alignment:
Q  299 atgatgggaaatgattaacctttctcatgtgaacacacaccaattt 344  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||    
T  7219693 atgatgggaaaggattaacctttcccatgtgaacacacacctattt 7219738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 8560792 - 8560829
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  8560792 tgggaaaggattaacctttcccatgtgaacacacacca 8560829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 42839737 - 42839700
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  42839737 tgggaaaggattaacctttcccatgtgaacacacacca 42839700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 26423795 - 26423757
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacaccaa 341  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  26423795 tgggaaaggattaacctttcccatgtgaacacacaccaa 26423757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 389455 - 389492
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  389455 tgggaaaggattaacctttcccatgtgaacacacacca 389492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 20422167 - 20422130
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  20422167 tgggaaaggattaacctttcccatgtgaacacacacca 20422130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 48782127 - 48782160
Alignment:
Q  306 gaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||||||||||||| ||||||||||||||||    
T  48782127 gaaatgattaacctttcccatgtgaacacacacc 48782160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 55816500 - 55816537
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacca 340  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  55816500 tgggaaaggattaacctttcccatgtgaacacacacca 55816537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 199035 - 198999
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  199035 tgggaaaggattaacctttcccatgtgaacacacacc 198999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 20075561 - 20075525
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  20075561 tgggaaaggattaacctttcccatgtgaacacacacc 20075525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 32902515 - 32902551
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32902515 tgggaaaatattaacctttctcatgtgaacacacacc 32902551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 36111266 - 36111302
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  36111266 tgggaaaggattaacctttcccatgtgaacacacacc 36111302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 40345180 - 40345216
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  40345180 tgggaaaagattaacctttcccatgtgaacacacacc 40345216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 52597526 - 52597490
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  52597526 tgggaaaagattaacctttcccatgtgaacacacacc 52597490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 6032194 - 6032158
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  6032194 tgggaaaggattaacctttcccatgtgaacacacacc 6032158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 12809105 - 12809069
Alignment:
Q  303 tgggaaatgattaacctttctcatgtgaacacacacc 339  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  12809105 tgggaaaggattaacctttcccatgtgaacacacacc 12809069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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