View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19695_low_4 (Length: 658)
Name: NF19695_low_4
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19695_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 642
Target Start/End: Complemental strand, 22042025 - 22041371
Alignment:
| Q |
13 |
aatatcctggaggaatcaaattaatgctctatgagtttcagtaagtagcatattaacatttgaatatatttgctaattataatgcataaatttgaccaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22042025 |
aatatcctggaggaatcaaattaatgctct--gagtttcagta-gtagtatattaacatttgaatatatttgataattataatgcataaatttgaccaag |
22041929 |
T |
|
| Q |
113 |
cgttatcttttaaagagcataatataggattgaaaaatatcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22041928 |
cgttatcttttaaagagcataatataggattgaaaaatctcttttacaaataataatttaagattaataaatcacaagtacaacatcaaaatagtctact |
22041829 |
T |
|
| Q |
213 |
gaatagaagctatgcagcaacattcactatctcctttacaataaccaccaccagaaaaacccatagttaccatacaaaagtggttacagaattctgaacc |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22041828 |
gaatagaagctatgcagcaacatttactatttccttcacaataaccaccaccagaaaaacccatagttaccgtacaaaagtggttacagaattctgaacc |
22041729 |
T |
|
| Q |
313 |
accagcgcatctttcataactaaagcaacattttcctgatacaatcaacgaaacaataaaattagtgataataataacagagataataaaatcatagata |
412 |
Q |
| |
|
|| |||||||||||||||| | |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22041728 |
actagcgcatctttcataaggatagcaacggtctcctggtacaatcaacgaaataataaaattagtgataataataacagagataataaaatcatagata |
22041629 |
T |
|
| Q |
413 |
ggattttgattaag--------gattgtaattattaggcacaagaggtatgaattcttgatgatttagcaacttgtatatat-------ttttattaatt |
497 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
22041628 |
tgattttgattaagctaacaatcattgtaattattaggcacaagaggtatgaattgttgatgatttagcaacttgtatatatacataaacatttttaatt |
22041529 |
T |
|
| Q |
498 |
aaacagctaaaaatatgcatgcat---------------gcataacacaactctattttttgttgttgttggtaa-ttacctacaaccatgatggaagca |
581 |
Q |
| |
|
|||||| ||||||||||||||||| || |||| |||||||||| ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
22041528 |
aaacagttaaaaatatgcatgcatatcaaacatcaaacaccagtacacgactctatttt---ttgttgttggtaatttacctacaaccatgatggaacca |
22041432 |
T |
|
| Q |
582 |
aaacacaaaatgaagaagatgaaaaggagaggatggatgtgagttgccattgatctacttg |
642 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
22041431 |
aaacacaaaattaagaagatgaaaaggagaagatgtatgtgagttgccattgaactacttg |
22041371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 22017079 - 22017379
Alignment:
| Q |
25 |
gaatcaaattaatgctctatgagtttcagtaagtagcatattaacatttgaatatatttgctaattataatgcataaatttgaccaagcgttatctttta |
124 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | || | || ||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
22017079 |
gaatcaaattaatgccctatgactttcagta-gcagtagatcaacatttgaatatatttgctaattataatgcataaatttgaccaagcatga------- |
22017170 |
T |
|
| Q |
125 |
aagagcataatataggattgaaaaatatcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctactgaatagaagcta |
224 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
22017171 |
---agcataatataggattgaaaaatctcttttacaaataataattcaagattaataaatcacaaatacaacatcaaaatagtctactgtctggaagcta |
22017267 |
T |
|
| Q |
225 |
tgcagcaacattcacta---tctccttt---acaataaccaccaccagaaaaacccatagttaccatacaaaagtggttacagaattctgaaccaccagc |
318 |
Q |
| |
|
|||| |||||| |||| | |||||| ||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||| || | |
|
|
| T |
22017268 |
tgcaacaacatgtactactttttcctttttcacaataaccaccatcag-gaaagccatagttaccatacaaaaatggttacagaattctgaaccaacaac |
22017366 |
T |
|
| Q |
319 |
gcatctttcataa |
331 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22017367 |
gcatctttcataa |
22017379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 427 - 486
Target Start/End: Original strand, 22017484 - 22017543
Alignment:
| Q |
427 |
gattgtaattattaggcacaagaggtatgaattcttgatgatttagcaacttgtatatat |
486 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22017484 |
gattctaattattaggcacaagagatatgaattcttgatgatttagcaacttgtatatat |
22017543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University