View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19695_low_6 (Length: 602)

Name: NF19695_low_6
Description: NF19695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19695_low_6
NF19695_low_6
[»] chr6 (9 HSPs)
chr6 (217-584)||(31967892-31968259)
chr6 (242-584)||(31964471-31964811)
chr6 (232-383)||(31969543-31969694)
chr6 (437-504)||(31958503-31958570)
chr6 (79-202)||(31958840-31958956)
chr6 (150-202)||(31966148-31966200)
chr6 (227-323)||(31958711-31958809)
chr6 (321-383)||(323743-323805)
chr6 (322-387)||(31672540-31672605)
[»] chr8 (2 HSPs)
chr8 (300-383)||(12224975-12225058)
chr8 (331-387)||(36643943-36643999)
[»] chr5 (4 HSPs)
chr5 (299-372)||(21782656-21782729)
chr5 (331-383)||(37063150-37063202)
chr5 (322-387)||(7096199-7096264)
chr5 (334-378)||(35960359-35960403)
[»] chr4 (3 HSPs)
chr4 (310-383)||(7368132-7368205)
chr4 (321-379)||(23676648-23676707)
chr4 (321-383)||(36734825-36734887)
[»] chr2 (2 HSPs)
chr2 (323-380)||(41240956-41241013)
chr2 (331-385)||(37033986-37034040)
[»] chr1 (5 HSPs)
chr1 (331-383)||(26184693-26184745)
chr1 (327-387)||(26293178-26293238)
chr1 (437-502)||(4549462-4549527)
chr1 (307-372)||(6265012-6265077)
chr1 (306-382)||(5150854-5150930)
[»] chr7 (3 HSPs)
chr7 (316-383)||(31002688-31002755)
chr7 (340-387)||(33601165-33601212)
chr7 (331-383)||(5006585-5006637)
[»] chr3 (5 HSPs)
chr3 (331-372)||(8697605-8697646)
chr3 (331-372)||(9049492-9049533)
chr3 (358-386)||(6241157-6241185)
chr3 (299-383)||(20192682-20192766)
chr3 (331-387)||(44284130-44284186)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 217 - 584
Target Start/End: Complemental strand, 31968259 - 31967892
Alignment:
Q  217 atcccttgcgttgcagcataccttgaatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaactatatgttttgataaacaact 316  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  31968259 atcccttgcattgcagcataccttgaatctcctttgcaatattatttccctattatatcgggagaaaattcttgtaaactatatgttttgataaacaact 31968160  T
Q  317 taattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagctcacattgatagcttataaaatatgataaa 416  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31968159 taattaagtggttttgtataaactattcctacaatagaaaataaaataaagtcaaactattttcataagctcacaatgatagcttataaaatatgataaa 31968060  T
Q  417 accagcttaaggacatgtcttaagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31968059 accagcttaaggacatgtcttaagctctcccaagctgtctcagaaatacttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcag 31967960  T
Q  517 gtatttcaaattctaacaatttcgtatctgcgcgaaaacaaagtaaccctcaataatgatgtttgaga 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967959 gtatttcaaattctaacaatttcgtatctgcgcgaaaacaaagtaaccctcaataatgatgtttgaga 31967892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 242 - 584
Target Start/End: Complemental strand, 31964811 - 31964471
Alignment:
Q  242 aatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaactatatgttttgataaacaacttaattaagtggttttgtataaacta 341  Q
    |||||||||||  |||||  ||||||||||||||||||| ||||||| |||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  31964811 aatctcctttgatatatttcttccctattatatcgggggaaaattctcgtaaactat--gttttgataaacgacttaattaagtggttttgtataaacta 31964714  T
Q  342 ttcctacaataaaaagtaaaataaagtcaaa-ctattttcataagctcacattgatagcttataaaatatgataaaaccagcttaaggacatgtcttaag 440  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||||||||||||||| |||||||| | ||||| || |||||||   |||| ||||    
T  31964713 ttcctacaataaaagataaaataaagtcaaaactgttttcataagctcacattgatagct-ataaaataagctaaaaacaacttaagggtttgtcataag 31964615  T
Q  441 ctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaacaattcctctgcaggtatttcaaattctaacaatttcg 540  Q
    ||||| |||| ||||||||||||||||||||||||  |||| |||||||||||| || |||||||||||||  | || ||||||||||||||||||||||    
T  31964614 ctctcacaagatgtctcagaaatgcttatggcaatatatatactcaaataaaccaattcaaacaattcctcaactggcatttcaaattctaacaatttcg 31964515  T
Q  541 tatctgcgcgaaaacaaagtaaccctcaataatgatgtttgaga 584  Q
    |||| || ||||||||||||||| || ||||||||| |||||||    
T  31964514 tatccgcacgaaaacaaagtaactcttaataatgatttttgaga 31964471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 31969694 - 31969543
Alignment:
Q  232 gcataccttgaatctcctttgcaatattatttccctattatatcggggggaaattcttgtaaact-atatgttttgataaacaacttaattaagtggttt 330  Q
    |||||||||||||||||||||| | |||  ||||||||||||| |||   ||||||| ||||||| |||||||||||||||||||||||||||||||||     
T  31969694 gcataccttgaatctcctttgctacattccttccctattatattgggaa-aaattctggtaaacttatatgttttgataaacaacttaattaagtggtta 31969596  T
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    | |||||||||||   | ||||||   ||||||||| ||||||||||||||||    
T  31969595 tttataaactatttacaaaataaatgataaaataaaatcaaactattttcata 31969543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 504
Target Start/End: Complemental strand, 31958570 - 31958503
Alignment:
Q  437 taagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaaca 504  Q
    ||||||||||||| | |||||| |||||||||||||| | |||||||||| ||||||| |||||||||    
T  31958570 taagctctcccaatcagtctcacaaatgcttatggcagtcgatatgctcagataaaccaatccaaaca 31958503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 31958956 - 31958840
Alignment:
Q  79 gcatcatgtcattaggatattttagttttgcagttgcaaaagcatgctcggattcgaattaactaactaaagagtttaacttacacggccagaagactag 178  Q
    ||||||| ||||| |||||| || | ||||||||| |||||| |||||||||| ||||       |||| || ||||||||||||||||||||||||| |    
T  31958956 gcatcatatcattgggatatgtttggtttgcagtttcaaaagtatgctcggatccgaa-------actatagtgtttaacttacacggccagaagactgg 31958864  T
Q  179 ttggaccctccaaaattgttgtta 202  Q
     ||| |||||||||| || |||||    
T  31958863 ctgggccctccaaaactgctgtta 31958840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 31966200 - 31966148
Alignment:
Q  150 gagtttaacttacacggccagaagactagttggaccctccaaaattgttgtta 202  Q
    |||||||| |||||||| ||||||||||| |||||||||||||| ||||||||    
T  31966200 gagtttaatttacacggtcagaagactagctggaccctccaaaactgttgtta 31966148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 31958809 - 31958711
Alignment:
Q  227 ttgcagcataccttgaatctcctttgcaatattatttccctattatatcgg--ggggaaattcttgtaaactatatgttttgataaacaacttaattaa 323  Q
    |||| |||||||||||||||||||||| |||||  |||||||| |||      |||||||  || ||||||||| ||||||||||||||||||||||||    
T  31958809 ttgctgcataccttgaatctcctttgctatattccttccctataataatattaggggaaaaactcgtaaactatctgttttgataaacaacttaattaa 31958711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 323743 - 323805
Alignment:
Q  321 taagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||||||||||||| ||||| ||| | |||||  ||||||||| ||||||| ||||||||    
T  323743 taagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcata 323805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 31672605 - 31672540
Alignment:
Q  322 aagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    ||||| || ||||||||||||| | |  | ||||| ||||||||||||||||| ||||||||||||    
T  31672605 aagtgtttatgtataaactatttccatgacaaaaaataaaataaagtcaaactgttttcataagct 31672540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 12225058 - 12224975
Alignment:
Q  300 tgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||| ||||||||||||||||||| | || |||||||  |||| |||  | ||||  ||||||||||||||||||||||||||    
T  12225058 tgtttggataaacaacttaattaagagcttatgtataagttatttctaagacaaaagataaaataaagtcaaactattttcata 12224975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 36643999 - 36643943
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    ||||||| ||||| ||| |||||||  || | |||||||||||||||||||||||||    
T  36643999 tgtataagctatttctataataaaagatacagtaaagtcaaactattttcataagct 36643943  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 21782729 - 21782656
Alignment:
Q  299 atgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaa 372  Q
    |||||| ||||||||||||||||||||| || ||| ||| ||||| ||| || ||||  |||||||||||||||    
T  21782729 atgtttggataaacaacttaattaagtgtttatgtttaagctatttctataacaaaagctaaaataaagtcaaa 21782656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 37063202 - 37063150
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||||||||| ||| || ||||  ||||||||||||||||||||||||||    
T  37063202 tgtataaactatttctataacaaaagataaaataaagtcaaactattttcata 37063150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 7096264 - 7096199
Alignment:
Q  322 aagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    ||||| || ||||||| ||||| ||| || ||||  |||||||||||||||| |||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaaccattttcataagct 7096199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 35960359 - 35960403
Alignment:
Q  334 ataaactattcctacaataaaaagtaaaataaagtcaaactattt 378  Q
    |||||||||| ||| |||||||  |||||||||||||||||||||    
T  35960359 ataaactatttctataataaaagataaaataaagtcaaactattt 35960403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 7368205 - 7368132
Alignment:
Q  310 aacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||||| ||||| | || || |||||||||| |||  ||||||||||||||||||||||| | ||||||||    
T  7368205 aacaacttatttaagcgcttatgaataaactatttctatgataaaaagtaaaataaagtcaaattgttttcata 7368132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 23676648 - 23676707
Alignment:
Q  321 taagtggttttgtataaactattcctacaataaaaag-taaaataaagtcaaactatttt 379  Q
    |||||| |||||||||| |||||  |||||||||||| |||||||||||| |||||||||    
T  23676648 taagtgcttttgtataatctatttatacaataaaaagataaaataaagtcgaactatttt 23676707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 36734825 - 36734887
Alignment:
Q  321 taagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    |||||| || ||||||| || || ||| || |||| |||||||||||||||||||||||||||    
T  36734825 taagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactattttcata 36734887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 41241013 - 41240956
Alignment:
Q  323 agtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttc 380  Q
    ||||||| ||||||||||||||||| || ||||  |||||||||||| ||||||||||    
T  41241013 agtggttatgtataaactattcctataacaaaatataaaataaagtcgaactattttc 41240956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 37033986 - 37034040
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataag 385  Q
    ||||||||||||| ||| || ||||  |||||||||||||||| |||||||||||    
T  37033986 tgtataaactatttctataaaaaaagataaaataaagtcaaacgattttcataag 37034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 26184693 - 26184745
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||||||||| ||| || |||| |||||||||||||||| ||||||||||    
T  26184693 tgtataaactatttctataagaaaaggtaaaataaagtcaaattattttcata 26184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 26293238 - 26293178
Alignment:
Q  327 gttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    |||||| |||| ||||| ||| || ||||||||||||||||||||| | ||||||||||||    
T  26293238 gttttgcataagctatttctataacaaaaagtaaaataaagtcaaattgttttcataagct 26293178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 502
Target Start/End: Complemental strand, 4549527 - 4549462
Alignment:
Q  437 taagctctcccaagctgtctcagaaatgcttatggcaattgatatgctcaaataaacccatccaaa 502  Q
    ||||||||||||| | |||||||||||||||||| || | ||||  ||||||||| || |||||||    
T  4549527 taagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 6265012 - 6265077
Alignment:
Q  307 ataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaa 372  Q
    |||||||||||||||| ||| |||| ||||| ||| | ||| || ||||| |||||||||||||||    
T  6265012 ataaacaacttaattatgtgcttttatataagctacttctataacaaaaaataaaataaagtcaaa 6265077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 5150854 - 5150930
Alignment:
Q  306 gataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcat 382  Q
    |||| ||||||||||||| || || ||||| | ||||  |||||  ||||  |||||||||||||||||||||||||    
T  5150854 gatacacaacttaattaaatgcttatgtattagctatatctacaggaaaatataaaataaagtcaaactattttcat 5150930  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 31002688 - 31002755
Alignment:
Q  316 ttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||||||| || ||||||||||||| | || | ||||  ||||||||||||||| ||||||||||    
T  31002688 ttaattaagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcata 31002755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 33601212 - 33601165
Alignment:
Q  340 tattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    |||| ||||| |||||| ||||||||||||||||| ||||||||||||    
T  33601212 tatttctacactaaaaaataaaataaagtcaaactgttttcataagct 33601165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 5006637 - 5006585
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    ||||||| ||||||||| || ||||  ||||||||||||||||| ||||||||    
T  5006637 tgtataagctattcctataacaaaagataaaataaagtcaaactgttttcata 5006585  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 8697605 - 8697646
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaa 372  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  8697605 tgtataaactattcctacaataaaagatagaataaagtcaaa 8697646  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 9049492 - 9049533
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaa 372  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  9049492 tgtataaactattcctacaataaaagatagaataaagtcaaa 9049533  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 6241185 - 6241157
Alignment:
Q  358 taaaataaagtcaaactattttcataagc 386  Q
    |||||||||||||||||||||||||||||    
T  6241185 taaaataaagtcaaactattttcataagc 6241157  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 20192766 - 20192682
Alignment:
Q  299 atgttttgataaacaacttaattaagtggttttgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcata 383  Q
    |||||| |||||||| || ||||||||| || ||||||| |||||  || || ||||  ||||||||||||||||  ||||||||    
T  20192766 atgtttggataaacagctcaattaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcata 20192682  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 44284186 - 44284130
Alignment:
Q  331 tgtataaactattcctacaataaaaagtaaaataaagtcaaactattttcataagct 387  Q
    ||||||| ||||| ||| || ||||| ||||| ||||||||||| ||||||||||||    
T  44284186 tgtataagctatttctataacaaaaaataaaacaaagtcaaactgttttcataagct 44284130  T

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