View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19696_high_3 (Length: 525)

Name: NF19696_high_3
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19696_high_3
NF19696_high_3
[»] chr1 (14 HSPs)
chr1 (20-515)||(1793520-1794016)
chr1 (20-136)||(2012773-2012889)
chr1 (19-132)||(2011275-2011388)
chr1 (20-135)||(2007290-2007408)
chr1 (20-142)||(2020529-2020651)
chr1 (27-119)||(3373532-3373624)
chr1 (201-277)||(2007511-2007587)
chr1 (303-371)||(2007641-2007708)
chr1 (201-277)||(2020712-2020788)
chr1 (29-136)||(3379557-3379664)
chr1 (198-279)||(2012992-2013074)
chr1 (368-444)||(2007731-2007807)
chr1 (24-56)||(3342075-3342107)
chr1 (27-119)||(6600959-6601051)
[»] chr2 (4 HSPs)
chr2 (26-136)||(20935257-20935367)
chr2 (464-508)||(20954211-20954255)
chr2 (464-508)||(20935971-20936014)
chr2 (464-508)||(39275112-39275156)
[»] chr4 (1 HSPs)
chr4 (22-93)||(21238302-21238373)


Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Original strand, 1793520 - 1794016
Alignment:
Q  20 tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  1793520 tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgcgtgtttagaagctcgcctaatcttaaagaactacatatattagtgagtg 1793619  T
Q  120 atcatttagtttggcttaactttgtttatgcatttgtgtcatgtttttcagttctagaatttgcaaactttgtctgccttaaagtatttgtctagtgcct 219  Q
     |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1793620 ctcatttagtttggcttgactttgtttatgcttttgtgtcatgtttttcagttctagaatttgcaaactttgtctggcttaaagtatttgtctagtgcct 1793719  T
Q  220 ttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793720 ttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagt 1793819  T
Q  320 cctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgccctttttgtacgaacctcccccctttgatttttg 419  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1793820 ccttt-aatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgtcctttttgtacgaacctcccccctttgatttttg 1793918  T
Q  420 gatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttccgcctttg 515  Q
    ||||||||||||||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1793919 gatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttcctcctttg 1794016  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 2012773 - 2012889
Alignment:
Q  20 tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta 119  Q
    |||||||| ||||||||| | |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  2012773 tggttaagtataaacttctacgacttgaaagaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaaagaattaaatatatttgtgagta 2012872  T
Q  120 atcatttagtttggctt 136  Q
     ||||||||||||||||    
T  2012873 ctcatttagtttggctt 2012889  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 2011275 - 2011388
Alignment:
Q  19 atggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagt 118  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  2011275 atggttaagtataaacttcaatgagttgaaggaaatttcaactgctctaagtgtgttcagaagctcgcctaatcttaaagaactaaaaatatttgtgagt 2011374  T
Q  119 aatcatttagtttg 132  Q
    | ||||||| ||||    
T  2011375 actcatttactttg 2011388  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 2007290 - 2007408
Alignment:
Q  20 tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgag-- 117  Q
    ||||| || ||||||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||| |||||      
T  2007290 tggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcaggagctcgcctaatcttaaagaattaaatatatttgtgagta 2007389  T
Q  118 -taatcatttagtttggct 135  Q
     || |||||||||||||||    
T  2007390 ctactcatttagtttggct 2007408  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 2020529 - 2020651
Alignment:
Q  20 tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta 119  Q
    ||||| || ||||||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| | ||| | |||||||    
T  2020529 tggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaaaaaactagaaataattgtgagta 2020628  T
Q  120 atcatttagtttggcttaacttt 142  Q
     ||||||| |||| ||| |||||    
T  2020629 ctcatttactttgacttgacttt 2020651  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 3373532 - 3373624
Alignment:
Q  27 gcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||  || | |||||||| |||||||||||| || || | ||||| |||||||    
T  3373532 gcataaacttcaatgacttgaaggaaatttcagctgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta 3373624  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 2007511 - 2007587
Alignment:
Q  201 aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac 277  Q
    |||||||| | ||||||||||||||||  ||||| |||||||||| ||   ||||||||||||||||||||||||||    
T  2007511 aagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac 2007587  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
Q  303 atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata 371  Q
    |||||||| ||||||  ||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  2007641 atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata 2007708  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 2020712 - 2020788
Alignment:
Q  201 aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac 277  Q
    |||||||||| |||| | ||| |||||  || | |||||||||||||| | ||||||||||||||||||||||||||    
T  2020712 aagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttac 2020788  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 3379557 - 3379664
Alignment:
Q  29 ataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagtaatcatttag 128  Q
    ||||||||||||| ||||||||||||||| ||||| || ||  || | |||||||| ||||| |||||| || |  | ||||| ||||||| | ||||||    
T  3379557 ataaacttcaatgtcttgaaggaaatttcggctgccctttgcttgctcagaagctcccctaaccttaaaaaattggaaatatttgtgagtacttatttag 3379656  T
Q  129 tttggctt 136  Q
    ||||||||    
T  3379657 tttggctt 3379664  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 2012992 - 2013074
Alignment:
Q  198 ttaaagtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa 279  Q
    ||||||||||||| |||||||||| | ||||   |||||||||||||||||| | |||||||| |||| |||||||| |||||    
T  2012992 ttaaagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa 2013074  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
Q  368 aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca 444  Q
    |||||||||||||| |  ||| | | ||| ||||| ||||||||||||| | |||||||||||||||  ||||||||    
T  2007731 aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca 2007807  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 3342075 - 3342107
Alignment:
Q  24 taagcataaacttcaatgacttgaaggaaattt 56  Q
    |||||||||||||||||||||||||| ||||||    
T  3342075 taagcataaacttcaatgacttgaagaaaattt 3342107  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 6601051 - 6600959
Alignment:
Q  27 gcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta 119  Q
    ||||||||||| |||| |  |||||||||||||||||||| ||  | || |||||||| ||||||||   ||||||  | |||||||||||||    
T  6601051 gcataaacttctatgattcaaaggaaatttcagctgctctttgccttttcagaagctcacctaatctacgagaactcgaaatattggtgagta 6600959  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 20935257 - 20935367
Alignment:
Q  26 agcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagtaatcatt 125  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||  || | |||||||| |||||||||  | || || | ||||| ||||||| |||||    
T  20935257 agcataaacttcgatgacttgaaggaaatttcggctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatt 20935356  T
Q  126 tagtttggctt 136  Q
    |||||| ||||    
T  20935357 tagtttagctt 20935367  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
Q  464 gagttttaatatgctctatgtctctcttatgcatactatctttcc 508  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  20954211 gagttttaatatgctctatgtccctcttatgcatactatctttcc 20954255  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
Q  464 gagttttaatatgctctatgtctctcttatgcatactatctttcc 508  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  20935971 gagttttaatatgctctatgcct-tcttatgcatactatctttcc 20936014  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
Q  464 gagttttaatatgctctatgtctctcttatgcatactatctttcc 508  Q
    ||||||||||| | | |||||||||||||||||||| ||||||||    
T  39275112 gagttttaataggttatatgtctctcttatgcatacaatctttcc 39275156  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 21238302 - 21238373
Alignment:
Q  22 gttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatct 93  Q
    ||||| ||||||||||||||||||||||||||| || |||||||| ||  || | |||||||| ||||||||    
T  21238302 gttaaacataaacttcaatgacttgaaggaaatctcggctgctctctgcttgctcagaagctcacctaatct 21238373  T

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