View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19696_high_4 (Length: 471)
Name: NF19696_high_4
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 22 - 453
Target Start/End: Original strand, 18511095 - 18511526
Alignment:
| Q |
22 |
ataccggaggatggaattccggtgcaagaaactgacagtagtgaacttagatccagagagaaaaagaagtggtggtttgaggacaaaacaagcagggaga |
121 |
Q |
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| T |
18511095 |
ataccggaggatggaattccggtgcaagaaactgacagtagtgaacttagatccagagagaaaaagaagtggtggtttgaggacaaaacaagcagggaga |
18511194 |
T |
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| Q |
122 |
ggatcgtgtcgtggtagttagtttctaggtgaagaaaaaacaaaacatgtttcttctttggttttgagagttacccttttgttcattcttagttctgaat |
221 |
Q |
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| T |
18511195 |
ggatcgtgtcgtggtagttagtttctaggtgaaggaaaaacaaaacatgtttcttctttggttttgagagttacccttttgttcattcttagttctgaat |
18511294 |
T |
|
| Q |
222 |
gctactttgaatccattggtttggaaaaagtgaaaatttgagataaaatatggggtttttgttgaaagaagctttgaagactctttgtgctaggaatcaa |
321 |
Q |
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| T |
18511295 |
gctactttgaatccattggtttggaaaaagtgaaaatttgagataaaatatggggtttttgttgaaagaagctttgaagactctttgtgctaggaatcaa |
18511394 |
T |
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| Q |
322 |
tggtcttatgctgttttttggaagatcggttgcaataattcaaagtaagtagttttgttcaaggaagtgattannnnnnngctttggattttgagaaatt |
421 |
Q |
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| T |
18511395 |
tggtcttatgctgttttttggaagatcggttgcaataattcaaagtaagtagttttgttcaaggaagtgattatttttttgctttggattttgagaaatt |
18511494 |
T |
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| Q |
422 |
aattcagtggnnnnnnngtagatttgattatg |
453 |
Q |
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| T |
18511495 |
aattcagtggaaaaaaagtagatttgattatg |
18511526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 36706973 - 36706870
Alignment:
| Q |
271 |
atggggtttttgttgaaagaagctttgaagactctttgtgctaggaat---caatggtcttatgctgttttttggaagatcggttgcaataattcaaagt |
367 |
Q |
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||||| ||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
36706973 |
atgggttttttgttgaaagaagccttgaagactctctgtggtaggaataatcaatggtcttatgctgtgttttggaagattggttgcaacaattctaagt |
36706874 |
T |
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| Q |
368 |
aagt |
371 |
Q |
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|||| |
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| T |
36706873 |
aagt |
36706870 |
T |
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