View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19696_high_8 (Length: 361)

Name: NF19696_high_8
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19696_high_8
NF19696_high_8
[»] chr2 (3 HSPs)
chr2 (7-346)||(10626344-10626673)
chr2 (7-288)||(34596340-34596629)
chr2 (62-316)||(10951407-10951663)
[»] chr3 (4 HSPs)
chr3 (7-309)||(22911416-22911719)
chr3 (7-245)||(3154955-3155193)
chr3 (7-184)||(13995470-13995647)
chr3 (258-309)||(13995349-13995400)
[»] chr4 (3 HSPs)
chr4 (7-316)||(30406948-30407259)
chr4 (68-342)||(53244553-53244827)
chr4 (7-286)||(7408128-7408409)
[»] chr1 (2 HSPs)
chr1 (7-223)||(37706615-37706830)
chr1 (60-330)||(15402659-15402931)
[»] chr6 (1 HSPs)
chr6 (12-153)||(3258571-3258713)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 10626344 - 10626673
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||          |||||    
T  10626344 aatattaacttctatttggagaattctatagtcacttggctgaggcaagacgcgtttagcacaaataattatttattctttgttg----------gattt 10626433  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||    
T  10626434 ggtggacacgaaactcactttgtatggagaatgagataatttctattttctcctcgaatgtaaaaatttacaattttgcagcccttctttgttttgtttt 10626533  T
Q  207 ctcttcggttttatccacggatataggaggtcgttatgtcttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaa 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10626534 ctcttcggttttatccacggatataagaggtcgttatgtcttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaa 10626633  T
Q  307 tcctggaataaccaattttggtggtgttcttcgtagtaat 346  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  10626634 tcctggaataaccaattttggttgcgttcttcgtagtaat 10626673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 34596340 - 34596629
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||||||||||| |||| |||||||   ||||||||||| || |||||| | |||||| |||||||||||||||||| || ||||||||| |||||||    
T  34596340 aatattaacttctacttggggaattctctggtcacttggctcagacaaggcgcatttagcgcaaataattatttattctctgctgctctttggtggattt 34596439  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttg------aatgtaaaaatttacaatttggcagcccttctttgttc 200  Q
    ||||  | |||||||| |||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||||||| |||||||| |||     
T  34596440 ggtgcgctcgaaactcactttgtatggagaatgagataatttctattttctccttgaaggtaaaggtaaaaatttacaatttggcaacccttcttcgttt 34596539  T
Q  201 tgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttga 288  Q
    |||||||||| |||  |||||||||||||||||||||||||||||  ||||||||   ||||||||||||| |||||| |||||||||||    
T  34596540 tgttttctctccggcattatccacggatataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttga 34596629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 62 - 316
Target Start/End: Complemental strand, 10951663 - 10951407
Alignment:
Q  62 ttagcacaaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctcctt 161  Q
    ||||| |||||| | ||||||||| || ||||||||| |||||||||||  | ||||||||  ||||||||||||||||||  |||||||||||||||||    
T  10951663 ttagcgcaaatagtcatttattctctgctgctctttggtggatttggtgcgctcgaaactcattttgtatggagaatgagacgatttctattttctcctt 10951564  T
Q  162 gaatgtaaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggag 259  Q
    ||| |||||||||||||||||| ||| ||||| | |||||||||||||| |||  |||||||| ||||||| |||| |||||||  |||||||| | |||    
T  10951563 gaaggtaaaaatttacaatttgtcagtccttcctagttctgttttctctccggcattatccacagatatagaaggttgttatgtgacttggcatctagag 10951464  T
Q  260 gagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaata 316  Q
    ||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||    
T  10951463 gagagtatggtcgttgtcttgaatgttgatggcaacaattttgaaaatcctggaata 10951407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 22911719 - 22911416
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||||||||||| |||| |||||||   ||||||||||| || |||||| |||||||| || ||||| ||||||||| || ||||||||| |||||||    
T  22911719 aatattaacttctagttggggaattctctggtcacttggctcagacaaggcgcgtttagcgcatataatcatttattctctgctgctctttggtggattt 22911620  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
    ||||  | ||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22911619 ggtgcgctcgaaagtcactttgtatggagaatgagataatttctattttttccttgaaggtaaaaatttacaatttggcagcccttctttgttctgtttt 22911520  T
Q  207 ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttgga 304  Q
    |||| |||  |||||||| |||||||| ||| |||||||  ||||||||   ||||||||||||| | |||| ||||||||||  | || || |||||||    
T  22911519 ctctccggcattatccacagatatagg-ggttgttatgtgacttggcatccagaggagagtatggcctttgtcttgaatgttgttggcagcagttttgga 22911421  T
Q  305 aatcc 309  Q
    |||||    
T  22911420 aatcc 22911416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 3154955 - 3155193
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    ||||||||||||||||||| ||||||||  ||||| | ||| || || |||  |||||||||||||||| ||||||||| ||   ||||||| || ||||    
T  3154955 aatattaacttctatttggtgaattctatggtcacctagctcagacagggcgagtttagcacaaataatcatttattctatgcgtctctttggtgaattt 3155054  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
     |||  ||||||| || |||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||    
T  3155055 tgtgcgcacgaaattcactttgtatggggaatgatataatttgtattttctccttgaaggtaaaaatttataatttggcagcctttctttgttgtgtttt 3155154  T
Q  207 ctcttcggttttatccacggatataggaggtcgttatgt 245  Q
    |||| ||| |||||||||| ||| |||||||||||||||    
T  3155155 ctctccggctttatccacgtatagaggaggtcgttatgt 3155193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 13995647 - 13995470
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||||||||||||||| |||||||||| ||||  ||||| |  |||||||| |||||| |||||||| ||||||| | || |  || ||  |||||||    
T  13995647 aatattaacttctatttgtagaattctacggtcatctggctcaaacaaggcacctttagcgcaaataatcatttattatctgctaatcgtttgtggattt 13995548  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttgg 184  Q
     ||| |||| |||||| ||||||||||||| |||||||||||||||||| ||||| || |||||||| ||||| ||||    
T  13995547 tgtgcacacaaaactcactttgtatggagagtgagataatttctattttatccttaaaggtaaaaatctacaacttgg 13995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 13995400 - 13995349
Alignment:
Q  258 aggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcc 309  Q
    |||||||| ||| |||||| ||||||||||| |||| |||||||||||||||    
T  13995400 aggagagtctggccgttgtcttgaatgttgatgacatcaattttggaaatcc 13995349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 30407259 - 30406948
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||||||||||| |||| ||| |||   | ||||||||| || |||||  ||||| || |||||||| ||||||||| || ||||||||  |||||||    
T  30407259 aatattaacttctacttggggaactctctggccacttggctcagacaaggtgcgtttggcgcaaataatcatttattctctgctgctcttttgtggattt 30407160  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
    ||||  | |||||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||| || ||||||||||    
T  30407159 ggtgcgctcgaaactcactttgtatggagaatgagataatttatattttcttcttgaaggtaaaaatttacaatttgacagcccttattcgttctgtttt 30407060  T
Q  207 ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttgga 304  Q
    |||||||   |||||||| ||||||||||||||||||||  ||||||||   ||||||||||||| |||||| ||||||||||| | ||||  |||||||    
T  30407059 ctcttcgacattatccacagatataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttgatggcaacggttttgga 30406960  T
Q  305 aatcctggaata 316  Q
    |||  |||||||    
T  30406959 aattttggaata 30406948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 68 - 342
Target Start/End: Complemental strand, 53244827 - 53244553
Alignment:
Q  68 caaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgt 167  Q
    |||||||| ||||||||||||||| |||||| |||||||||||  || ||||||| ||||||||||||||||||||||| ||||||||| ||| ||| ||    
T  53244827 caaataataatttattctttgttgttctttgatggatttggtgcgcaggaaactcactttgtatggagaatgagataatctctattttcccctagaaggt 53244728  T
Q  168 aaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagt 265  Q
    |||||||||||||||||| | ||||||||||| |||| |||||  ||  ||||||||| |||||||| ||| ||||||  |||||||| |||||||||||    
T  53244727 aaaaatttacaatttggcggtccttctttgttttgttctctct--ggccttatccacgaatataggacgtcattatgtgacttggcatctggaggagagt 53244630  T
Q  266 atggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaataaccaattttggtggtgttcttcgtag 342  Q
    |||| | |||| ||||||||||| |||||||||||||||||||| | |||| |  |||||||||| ||||| |||||    
T  53244629 atggccattgtcttgaatgttgatgacaacaattttggaaatcccgaaatatcttattttggtggcgttctccgtag 53244553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 7408128 - 7408409
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    |||||| ||||| ||| |||| |||||| ||||||  |||| |  ||||||| ||| ||   ||||| | ||||||||| |  ||||||||| |||||||    
T  7408128 aatattcacttcaattgggagcattctatagtcacaaggctcaaacaaggcatgttaagtggaaatattcatttattctcttatgctctttggtggattt 7408227  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
    ||||  ||  |||||| ||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  7408228 ggtgtgcattaaactcactttgtatgcagaatgagataatttctatttttttcttgaaggtaaaaatttacaatttggcagcccttctctgttttgtttt 7408327  T
Q  207 ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgtt 286  Q
    ||    || |||||||||| |||| |||||||||||| |  |||| ||  | || || |||||||||||||| |||||||||    
T  7408328 cttcctggctttatccacgaatattggaggtcgttatatgacttgacacctagatgaaagtatggtcgttgtcttgaatgtt 7408409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 37706615 - 37706830
Alignment:
Q  7 aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt 106  Q
    ||||||||||| ||||||| ||||||||  ||||| ||||| |||||||||  |||||||||||||||| ||| ||||| || ||||||||| |||||||    
T  37706615 aatattaacttttatttggggaattctatggtcacatggctcaggcaaggcgtgtttagcacaaataatcatt-attctctgctgctctttggtggattt 37706713  T
Q  107 ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt 206  Q
    ||||  | |||||||| |||||| | ||||||||||||||||||||| |||| ||||| || ||||| |||||||||||||||||||||  |||||||||    
T  37706714 ggtgcgctcgaaactctctttgtttagagaatgagataatttctattgtctctttgaaggtgaaaatctacaatttggcagcccttcttcattctgtttt 37706813  T
Q  207 ctcttcggttttatcca 223  Q
    |||| ||| ||||||||    
T  37706814 ctctccggctttatcca 37706830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 60 - 330
Target Start/End: Complemental strand, 15402931 - 15402659
Alignment:
Q  60 gtttagcacaaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctcc 159  Q
    ||||||| |||||||| |||||||||||  ||||||||| |||||||||||  | | ||| || || |||||||||||||| ||||||| ||| || | |    
T  15402931 gtttagcgcaaataatcatttattcttttatgctctttggtggatttggtgcgctcaaaagtcactctgtatggagaatgaaataatttatatattttgc 15402832  T
Q  160 ttgaatgtaaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttgg 257  Q
    ||||| ||| || |||| |||| |||| |||||||| |||||||||||||| ||  |||| ||||  ||||| |||||||||||||  ||||| ||   |    
T  15402831 ttgaaggtagaattttataattcggcaacccttcttcgttctgttttctctccgactttaaccacatatataagaggtcgttatgtgacttggtatcctg 15402732  T
Q  258 aggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaataaccaattttggtgg 330  Q
    || |||||| ||| ||||| ||||||||||| | ||||||||| | |||||| |||||| | | |||||||||    
T  15402731 agaagagtacggttgttgtcttgaatgttgatggcaacaatttcgaaaatcccggaatatctagttttggtgg 15402659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 3258713 - 3258571
Alignment:
Q  12 taacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggatttggtgg 111  Q
    ||||||||||| |||| |||||| |||||| ||||| || |||||   |||||     |||||| ||||||||||||||||| |||| || |||||| |     
T  3258713 taacttctattgggagcattctatagtcacgtggctcagacaaggggtgtttaatgtgaataatcatttattctttgttgctatttgatgcatttggcgc 3258614  T
Q  112 acacgaaactccctttgtatggagaatgagat-aatttctatt 153  Q
     |||||||||| ||||||||||||||||| || ||||||||||    
T  3258613 gcacgaaactctctttgtatggagaatgatataaatttctatt 3258571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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