View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19696_low_1 (Length: 591)

Name: NF19696_low_1
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19696_low_1
NF19696_low_1
[»] chr4 (4 HSPs)
chr4 (190-312)||(54189273-54189395)
chr4 (190-312)||(8569817-8569940)
chr4 (12-113)||(8570012-8570121)
chr4 (12-113)||(54189092-54189201)
[»] chr3 (2 HSPs)
chr3 (190-312)||(28695778-28695901)
chr3 (12-113)||(28695972-28696081)
[»] chr7 (4 HSPs)
chr7 (250-313)||(24511458-24511521)
chr7 (250-312)||(25035900-25035962)
chr7 (12-62)||(3368185-3368235)
chr7 (12-62)||(9891834-9891884)
[»] chr8 (1 HSPs)
chr8 (433-559)||(29387216-29387342)
[»] chr5 (2 HSPs)
chr5 (259-311)||(17039399-17039451)
chr5 (250-312)||(14417581-14417644)
[»] chr1 (1 HSPs)
chr1 (259-306)||(43532021-43532068)
[»] scaffold0957 (1 HSPs)
scaffold0957 (270-312)||(3070-3112)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 54189273 - 54189395
Alignment:
Q  190 gtgaaataaaactgtggttaaaatgttatttttataatattgaaaataattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttgc 289  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54189273 gtgaaataaaactgtagtttaaatattatttttataatattgaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttgc 54189372  T
Q  290 aaaaggtcatatgtgtagtagtg 312  Q
    ||||||| |||||||| ||||||    
T  54189373 aaaaggttatatgtgtcgtagtg 54189395  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 190 - 312
Target Start/End: Complemental strand, 8569940 - 8569817
Alignment:
Q  190 gtgaaataaaactgtggttaaaatgttatttttataatattgaaaa-taattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttg 288  Q
    |||||||||| |||  ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8569940 gtgaaataaatctgaagtttaaatgttatttttataatattgaaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttg 8569841  T
Q  289 caaaaggtcatatgtgtagtagtg 312  Q
    ||||||||||||||||||||||||    
T  8569840 caaaaggtcatatgtgtagtagtg 8569817  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 8570121 - 8570012
Alignment:
Q  12 atgaaactgatgaagagatgtcatgaagagattttgattaagcgatttt--------gattttgggataaagcccgtctgggaaaagtgattggatgaga 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||        |||||||||||||||||| |||| |||||||||||  ||||||    
T  8570121 atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagcgattttgggataaagcccttctgagaaaagtgattctatgaga 8570022  T
Q  104 gagatatctg 113  Q
    ||||||||||    
T  8570021 gagatatctg 8570012  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 54189092 - 54189201
Alignment:
Q  12 atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttg--------attttgggataaagcccgtctgggaaaagtgattggatgaga 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||        ||||||||||||||||| |||| |||||||||||  ||||||    
T  54189092 atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagctattttgggataaagcccttctgagaaaagtgattctatgaga 54189191  T
Q  104 gagatatctg 113  Q
    ||||||||||    
T  54189192 gagatatctg 54189201  T

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Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 190 - 312
Target Start/End: Complemental strand, 28695901 - 28695778
Alignment:
Q  190 gtgaaataaaactgtggttaaaatgttatttttataatattgaaaa-taattgttgaagtgatgtaacactttttaaaaaatgtcacatataagatgttg 288  Q
    |||||||||| |||  ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28695901 gtgaaataaatctgaagtttaaatgttatttttataatattgaaaaataattgttgtagtgatgtaacactttttaaaaaatgtcacatataagatgttg 28695802  T
Q  289 caaaaggtcatatgtgtagtagtg 312  Q
    ||||||||||||||||||||||||    
T  28695801 caaaaggtcatatgtgtagtagtg 28695778  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 28696081 - 28695972
Alignment:
Q  12 atgaaactgatgaagagatgtcatgaagagattttgattaagcgatttt--------gattttgggataaagcccgtctgggaaaagtgattggatgaga 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||        |||||||||||||||||| |||| |||||||||||  ||||||    
T  28696081 atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttgacaaagcgattttgggataaagcccttctgagaaaagtgattctatgaga 28695982  T
Q  104 gagatatctg 113  Q
    ||||||||||    
T  28695981 gagatatctg 28695972  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 24511458 - 24511521
Alignment:
Q  250 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtgc 313  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24511458 atgtaacactttttaaaaaatgtcacatataatatgttgcaaaaggtcatatgtgtagtagtgc 24511521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 25035900 - 25035962
Alignment:
Q  250 atgtaacactttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 312  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  25035900 atgtaacactttctaaaaaatgtcacatataagatgttgcaaaaagtcatatgcgtagtagtg 25035962  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 3368185 - 3368235
Alignment:
Q  12 atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttga 62  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  3368185 atgaaactgatgaggagatgtcatgaagagattttgattaagcaattttga 3368235  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 9891834 - 9891884
Alignment:
Q  12 atgaaactgatgaagagatgtcatgaagagattttgattaagcgattttga 62  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  9891834 atgaaactgatgaaatgatgtcatgaagcgattttgattaagcgattttga 9891884  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 433 - 559
Target Start/End: Original strand, 29387216 - 29387342
Alignment:
Q  433 gttaacatatctatatttcttttgcaaatttattaaatgatttctatttgatgttcat-tttactgctggaacttgataaatacatgtatgtagagtttg 531  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| || |||| ||| ||||  ||| |||||  ||||||| |||||||||||| ||     
T  29387216 gttaacatatctatatttcttttccaagtttattaaatgatttctaatt-atgtgcatgtttagagctcgaactaaataaatatatgtatgtagagctta 29387314  T
Q  532 gtgcgcattttaatgctggaactaacaa 559  Q
    ||| ||||||||| ||||||| ||||||    
T  29387315 gtgtgcattttaaggctggaattaacaa 29387342  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 17039399 - 17039451
Alignment:
Q  259 tttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgtagtagt 311  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17039399 tttttaaaatatgtcacatataagatgttgcaaaaggtcatatgtgtagtagt 17039451  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 14417581 - 14417644
Alignment:
Q  250 atgtaacactttttaaaa-aatgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 312  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  14417581 atgtaacactttttaaaaaaatgtcacataaaagatgttgcaaaacttcatatgtgtagtagtg 14417644  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 43532021 - 43532068
Alignment:
Q  259 tttttaaaaaatgtcacatataagatgttgcaaaaggtcatatgtgta 306  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||    
T  43532021 tttttataaaatgtcacatataagatgttgcaaaaagtcatacgtgta 43532068  T

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Target: scaffold0957 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 3112 - 3070
Alignment:
Q  270 tgtcacatataagatgttgcaaaaggtcatatgtgtagtagtg 312  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  3112 tgtcacatataagatgttgcaaaatgtcttatgtgtagtagtg 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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