View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19696_low_10 (Length: 325)

Name: NF19696_low_10
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19696_low_10
NF19696_low_10
[»] chr3 (33 HSPs)
chr3 (1-318)||(22615411-22615728)
chr3 (24-213)||(21937173-21937362)
chr3 (17-189)||(22657347-22657519)
chr3 (3-200)||(22115084-22115281)
chr3 (3-200)||(22186987-22187184)
chr3 (17-213)||(30989562-30989758)
chr3 (21-200)||(21945641-21945820)
chr3 (17-200)||(22028013-22028196)
chr3 (3-200)||(22052732-22052929)
chr3 (37-161)||(22208053-22208177)
chr3 (37-200)||(22179450-22179613)
chr3 (3-200)||(22034516-22034713)
chr3 (37-200)||(21930454-21930617)
chr3 (3-211)||(22104722-22104930)
chr3 (29-199)||(22621185-22621355)
chr3 (17-199)||(22648429-22648611)
chr3 (127-208)||(22458751-22458832)
chr3 (127-208)||(22481732-22481813)
chr3 (29-200)||(22436904-22437075)
chr3 (29-200)||(22630709-22630880)
chr3 (51-199)||(18967258-18967404)
chr3 (19-192)||(22468226-22468399)
chr3 (240-318)||(22115330-22115408)
chr3 (240-318)||(18967130-18967208)
chr3 (62-168)||(22431454-22431560)
chr3 (56-170)||(2749082-2749196)
chr3 (240-318)||(21937398-21937476)
chr3 (272-318)||(21945901-21945947)
chr3 (240-318)||(22358145-22358223)
chr3 (19-153)||(22368229-22368363)
chr3 (240-318)||(22442882-22442960)
chr3 (272-318)||(22657209-22657255)
chr3 (240-318)||(30989448-30989526)
[»] chr1 (7 HSPs)
chr1 (20-166)||(34975398-34975544)
chr1 (21-166)||(34989234-34989379)
chr1 (17-179)||(34980173-34980337)
chr1 (125-189)||(2305766-2305830)
chr1 (272-318)||(34975659-34975705)
chr1 (272-318)||(34980439-34980485)
chr1 (272-318)||(34989494-34989540)
[»] chr8 (1 HSPs)
chr8 (37-164)||(27294581-27294708)
[»] chr4 (1 HSPs)
chr4 (139-199)||(29610842-29610902)
[»] chr7 (2 HSPs)
chr7 (272-316)||(872870-872914)
chr7 (272-316)||(1234147-1234191)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 22615728 - 22615411
Alignment:
Q  1 agaaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615728 agaaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaat 22615629  T
Q  101 gtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615628 gtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 22615529  T
Q  201 gcaagtttcacaagtctttgcctcgggatattactacagaaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgt 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615528 gcaagtttcacaagtctttgcctcgggatattcctacagaaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgt 22615429  T
Q  301 tgttgtgtttgatgatgt 318  Q
    ||||||||||||||||||    
T  22615428 tgttgtgtttgatgatgt 22615411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 21937173 - 21937362
Alignment:
Q  24 taaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttg 123  Q
    |||| ||||| | ||||||||||||||| |||||||| |||||||||||||| || ||||||||||| || ||||| | |||||| |||||||| ||       
T  21937173 taaagggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgt 21937272  T
Q  124 tggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaa 213  Q
    |||||||||||||||||||||||||||||||||||||||| ||||   | | ||||||||||||| ||||||||||| ||||||| ||||    
T  21937273 tggacactttgattgtcgtgtatggatcacagtgtctcaagcatatgatgttgaagggttgttgaaggacatgttgctcaagttttacaa 21937362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 22657519 - 22657347
Alignment:
Q  17 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 116  Q
    ||||||||||| ||||||  ||||||||||||  | ||||| ||||||||||||||||| || ||||| |||||||| || || |||||||| ||||| |    
T  22657519 tggttggtaaagggaagatcagagcgcactgtcatatctgtcgtgggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgacagcaaag 22657420  T
Q  117 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag 189  Q
    |||||  |||||||||||| |||||||| |||||||||||||| ||||| |||| |||||||| |||||||||    
T  22657419 aggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaagtgttgttgag 22657347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22115084 - 22115281
Alignment:
Q  3 aaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgt 102  Q
    |||||||||| |  ||| ||||| | ||||| | ||||||||||||| | |||||||| |||||||||||||| || |||||||||||  | ||||| ||    
T  22115084 aaagattgattgattggatggtatagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagt 22115183  T
Q  103 ttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||| ||||||||  |   |||||||||||||||||||||||||||||||||||||||||||||     | ||||||||||||||||| |||||||    
T  22115184 ttttgacagcaaggatatcattggacactttgattgtcgtgtatggatcacagtgtctcaatcatatgaagttgaagggttgttgagggatatgttgc 22115281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22186987 - 22187184
Alignment:
Q  3 aaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgt 102  Q
    |||||||||| |  ||| ||||||| ||||| | ||||||||||||| | |||||||| |||||||||||||| || ||||| ||||| |||||||| ||    
T  22186987 aaagattgattgagtggatggtaaagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagt 22187086  T
Q  103 ttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||| ||||||||  |    |||||||||||||||||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22187087 ttttgacagcaaggatatcatgggacactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22187184  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 30989758 - 30989562
Alignment:
Q  17 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 116  Q
    ||||||||||| |||||||  |||||||| ||  | ||||| || || ||||||||||| ||||||||||||||| | ||||| |||||||| | || |     
T  30989758 tggttggtaaagggaagagatgagcgcacggtaatttctgtagtaggcatgggagggcaaggtaaaaccactcttacgaagaaagtttttgacaacagga 30989659  T
Q  117 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagtttcacaa 213  Q
    | ||   ||||||||||||||||||||||||||||| ||||||||||||||| | | | |||||||||||||||||||||||||  |||||| ||||    
T  30989658 atgtcattggacactttgattgtcgtgtatggatcatagtgtctcaatcatatactgttgaagggttgttgagggacatgttgctaaagttttacaa 30989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 21945641 - 21945820
Alignment:
Q  21 tggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggt 120  Q
    ||||||| ||||| |  ||||||||||| || || ||||| |||||||||||||| || ||||||||||| |||||||| |||||||| |||||||| ||    
T  21945641 tggtaaagggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgt 21945740  T
Q  121 ttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
       | ||||||||||||||| |||||||||||| ||||||||||||||   | | ||||| |||||||||||||||||||    
T  21945741 catttgacactttgattgtcttgtatggatcactgtgtctcaatcatatgatgttgaaggattgttgagggacatgttgc 21945820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 22028013 - 22028196
Alignment:
Q  17 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 116  Q
    ||||||||| | ||||| | |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| |||||||    
T  22028013 tggttggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaagg 22028112  T
Q  117 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |  |    |||||||||||||||||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22028113 atatcatgggacactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22028196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22052732 - 22052929
Alignment:
Q  3 aaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgt 102  Q
    |||||||||| |  ||| ||||||| ||||| | |||||||||||| || ||| |||| |||||||||||||| || ||||| ||||| |||||||| ||    
T  22052732 aaagattgattgattggatggtaaagggaagggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagt 22052831  T
Q  103 ttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||| ||||||||  |   |||||| ||||||||||| |||||||| |||||||||||||||||   | | ||||||||||||||||| |||||||    
T  22052832 ttttgacagcaaggatatcattggacattttgattgtcgggtatggattacagtgtctcaatcatatgatgttgaagggttgttgagggaaatgttgc 22052929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 22208053 - 22208177
Alignment:
Q  37 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 136  Q
    ||||| |||||||||||| ||||| || ||||||||||| |||||||| |||||||||||| | |||||||| ||||| ||||||  |||| ||||||||    
T  22208053 agagctcactgttgtctcggtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggatactttgat 22208152  T
Q  137 tgtcgtgtatggatcacagtgtctc 161  Q
    |||||||||||||||||||||||||    
T  22208153 tgtcgtgtatggatcacagtgtctc 22208177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 22179450 - 22179613
Alignment:
Q  37 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 136  Q
    |||||||||||| || |  |||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |   |||||||||||||    
T  22179450 agagcgcactgtggtattcgtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgat 22179549  T
Q  137 tgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22179550 tgtcgtgtatggattacagtgtctcaatcatataatgctgaaggattgttgagagacatgttgc 22179613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22034516 - 22034713
Alignment:
Q  3 aaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgt 102  Q
    |||||||||| |  ||| ||||| | ||||| | |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| ||    
T  22034516 aaagattgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagt 22034615  T
Q  103 ttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||| ||||||||  |    ||||||||||||| |||||||||||| ||||||||||||||||| | |   ||||| |||||||| ||||||||||    
T  22034616 ttttgacagcaaggatatcatgggacactttgattatcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgc 22034713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 21930454 - 21930617
Alignment:
Q  37 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 136  Q
    |||||||||||| || |||||||| |||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||  |   |||||| ||| ||    
T  21930454 agagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattttcat 21930553  T
Q  137 tgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |  || ||||||||||||||||||||||||||   | | |||||||||||||||||||||||||    
T  21930554 ttccgagtatggatcacagtgtctcaatcatatgatgttgaagggttgttgagggacatgttgc 21930617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 22104722 - 22104930
Alignment:
Q  3 aaagattgatcggctggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgt 102  Q
    |||||||||| |  ||| ||||||| ||||  | |||||||||||| || || ||||| |||||||||||||| || ||||| ||||| |||||||  ||    
T  22104722 aaagattgattgattggatggtaaagggaacggaagagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagt 22104821  T
Q  103 ttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgc 202  Q
    |||||| |||||||| ||   ||||||||||||||||| ||| |||||||||||||| || || || | | | |||||| | |||||||||||||||||     
T  22104822 ttttgacagcaaggatgtaattggacactttgattgtcatgtttggatcacagtgtcgcagtcctataatgttgaagggattttgagggacatgttgcga 22104921  T
Q  203 aagtttcac 211  Q
    ||| |||||    
T  22104922 aagcttcac 22104930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 22621355 - 22621185
Alignment:
Q  29 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 128  Q
    ||||||| |||||| |||||  |||||||||| ||||||||||| || || ||| ||||||||||||| || ||||| || ||||| |||||    ||||    
T  22621355 ggaagagaagagcgaactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggac 22621256  T
Q  129 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 199  Q
    |||| || | |||||||||| |||||||||| |||||||||  |||||| |||||| ||||  ||||||||    
T  22621255 acttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgctgagatacatgttg 22621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 22648611 - 22648429
Alignment:
Q  17 tggttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaagg 116  Q
    ||||||||| | ||||||  ||||||||||||  |||||||||| || ||||||||||  || ||||||||||||||||  || || ||||| ||||| |    
T  22648611 tggttggtagagggaagatcagagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagcaaag 22648512  T
Q  117 aggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 199  Q
    ||||    ||||||||||| | |||||||||||||| |||||  |||||||||  || |||||||||| |||| | |||||||    
T  22648511 aggtagcgggacactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttg 22648429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 22458832 - 22458751
Alignment:
Q  127 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt 208  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  22458832 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttt 22458751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 22481813 - 22481732
Alignment:
Q  127 acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt 208  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| ||| |||||||    
T  22481813 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttt 22481732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 22437075 - 22436904
Alignment:
Q  29 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 128  Q
    ||||||||||||||  | ||||||||| | || |||||||||||||| || ||||| ||||| |||||||| |||||||| | ||   | || |    ||    
T  22437075 ggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaac 22436976  T
Q  129 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    | ||||| |||| |||||||||||||||||||||||||||||||| ||||   |||||||||||||| ||||    
T  22436975 aatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgagggacattttgc 22436904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 22630880 - 22630709
Alignment:
Q  29 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 128  Q
    ||||||| ||| ||||| ||||||||| | || ||||||||||| | ||| ||||||||||||||||||||  ||||||| | |    ||||   |  ||    
T  22630880 ggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaac 22630781  T
Q  129 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgc 200  Q
    |||||||||||| || ||||||||| ||||||| | |||||| |||||||   |||||||||||||| ||||    
T  22630780 actttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacattttgc 22630709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 18967404 - 18967258
Alignment:
Q  51 tctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggat 150  Q
    |||||||||| |||||||||||||| || ||||| ||||| || ||||  |||| ||| | |||||| ||   |||||||||| |||||| | |||||||    
T  18967404 tctctgtggtaggaatgggagggcaaggaaaaacaactctagcaaagagagtttctgacaacaaggatgtcattggacactttaattgtcttatatggat 18967305  T
Q  151 cacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 199  Q
      ||||||||||||||||   | ||||||||||||| || |||||||||    
T  18967304 --cagtgtctcaatcatatgatgtagaagggttgttaagcgacatgttg 18967258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 22468399 - 22468226
Alignment:
Q  19 gttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggag 118  Q
    ||||||| | ||||||| ||||||||| ||||||||  | || ||||||||||| | ||| ||||||||| | |||||||| |||||||| | | |  ||    
T  22468399 gttggtagagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaag 22468300  T
Q  119 gtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgaggga 192  Q
    ||   |  ||| |||||||||| |||||||||||| ||||||| | |||||| |||||||   |||||||||||    
T  22468299 gtcgttaaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgaggga 22468226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 22115330 - 22115408
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| |||| | |||||  ||||| || ||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  22115330 aaatggatcgaggattattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt 22115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 18967208 - 18967130
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| ||| |||||| |  ||||| |||||||||||||| | | | |||||||| ||||||||||||||||||||    
T  18967208 aaatggatcgagagtcattgacagatgaagtaagaaactacttacgggataagaggtatgttgttgtgtttgatgatgt 18967130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 22431560 - 22431454
Alignment:
Q  62 ggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctc 161  Q
    ||||||||||| | ||| |||||||||||  ||||||| |||||||| | |||   |||   |  |||||||||||||||| ||||||||||||||||||    
T  22431560 ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctc 22431461  T
Q  162 aatcata 168  Q
    || ||||    
T  22431460 aaccata 22431454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 2749082 - 2749196
Alignment:
Q  56 gtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgattgtcgtgtatggatcacag 155  Q
    ||||| ||||||||||| |  || ||||||||||||||||||   |||||||| |||||  |||| |  | |||||||||||||||||  ||  ||||||    
T  2749082 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacactttgattgtcgtgcttgcgtcacag 2749181  T
Q  156 tgtctcaatcataca 170  Q
    | |||||||| ||||    
T  2749182 tttctcaatcttaca 2749196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 21937398 - 21937476
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| |||||||||| || |||||  | |||||||||||||    ||||||||||||| | ||||||||||||||    
T  21937398 aaatggatcgagggtcattgatggatgaaattagaaactacttgcgaagaaagaggtacgttatcgtgtttgatgatgt 21937476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 21945901 - 21945947
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    ||||| |||||||||||||||||||| ||||| || |||||||||||    
T  21945901 agaaattacttgcagcaaaagaggtatgttgtcgtctttgatgatgt 21945947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 22358223 - 22358145
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| ||  ||||||| | ||||| || ||||||||||||||  |||| ||||| ||||| ||||||||||||||    
T  22358223 aaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22358145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 22368363 - 22368229
Alignment:
Q  19 gttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggag 118  Q
    ||||||| | ||||||| | | ||||| ||||||||  | || ||||||||||| | ||| ||||||||||| |||||||| |||||||| | | |  ||    
T  22368363 gttggtagagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaag 22368264  T
Q  119 gtttgtggacactttgattgtcgtgtatggatcac 153  Q
    ||   |  |||||||||||||||| ||||||||||    
T  22368263 gtcgttaaacactttgattgtcgtttatggatcac 22368229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 22442960 - 22442882
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| ||  ||||||| | ||||| || ||||||||||||||  |||| ||||| ||||| ||||||||||||||    
T  22442960 aaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt 22442882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 22657255 - 22657209
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  22657255 agaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 22657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 30989526 - 30989448
Alignment:
Q  240 aaatggatagagggtcattaatcgatgaggtaagaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    |||||||| |||||||||| |  ||||| || ||||||||||||| |  ||| ||||| || |||||||||||||||||    
T  30989526 aaatggatcgagggtcattgactgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgt 30989448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 34975398 - 34975544
Alignment:
Q  20 ttggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggagg 119  Q
    |||||||| ||||||||||||||||||||  ||||||| || || ||||||||||| || |||||||||||||| || || |||||||||||||| ||||    
T  34975398 ttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagagg 34975497  T
Q  120 tttgtggacactttgattgtcgtgtatggatcacagtgtctcaatca 166  Q
    ||   ||||||||||| ||||||||||||||||||||||| ||||||    
T  34975498 ttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca 34975544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 34989234 - 34989379
Alignment:
Q  21 tggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggt 120  Q
    ||||||| ||||||||||||||||||||  ||||||| || || ||||||||||| || |||||||||||||| || || |||||||||||||| |||||    
T  34989234 tggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggt 34989333  T
Q  121 ttgtggacactttgattgtcgtgtatggatcacagtgtctcaatca 166  Q
    |   ||||||||||| ||||||||||||||||||||||| ||||||    
T  34989334 tgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca 34989379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 34980173 - 34980337
Alignment:
Q  17 tggttggtaaaaggaagagtagagcgcactgttg--tctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaa 114  Q
    ||||||||||| ||||||||||||||||||||    ||||||| || |||||||||||||| || ||||  |||||||| || || ||||||||||||||    
T  34980173 tggttggtaaagggaagagtagagcgcactgtgtcatctctgtagttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaa 34980272  T
Q  115 ggaggtttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaag 179  Q
     ||||||   ||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||    
T  34980273 agaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaag 34980337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 2305830 - 2305766
Alignment:
Q  125 ggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag 189  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||  ||||||||    
T  2305830 ggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgag 2305766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 34975659 - 34975705
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34975659 agaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34975705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 34980439 - 34980485
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34980439 agaaattacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 34989494 - 34989540
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt 318  Q
    ||||| ||||||||| |||||||||| ||| ||||||||||||||||    
T  34989494 agaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt 34989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 27294581 - 27294708
Alignment:
Q  37 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 136  Q
    |||| ||||||| || |||||||| ||||||||||| || || ||||||||||| | |||||| |||||||| |||||||| ||    |||||| ||||     
T  27294581 agagggcactgtagtttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgac 27294680  T
Q  137 tgtcgtgtatggatcacagtgtctcaat 164  Q
    | ||||||||||||||||||||||||||    
T  27294681 tatcgtgtatggatcacagtgtctcaat 27294708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 29610902 - 29610842
Alignment:
Q  139 tcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttg 199  Q
    |||||||||||||||||| || |||||||||| ||||||||| ||| | |||| |||||||    
T  29610902 tcgtgtatggatcacagtatcacaatcatacaatatagaaggattgctaaggggcatgttg 29610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 872914 - 872870
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgat 316  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||||    
T  872914 agaaattacttgcagcaaaagacatacgttgttgtgtttaatgat 872870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 1234191 - 1234147
Alignment:
Q  272 agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgat 316  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||||    
T  1234191 agaaattacttgcagcaaaagacatacgttgttgtgtttaatgat 1234147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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