View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19696_low_13 (Length: 250)
Name: NF19696_low_13
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 6753454 - 6753621
Alignment:
| Q |
23 |
tttgaacatgtaatattgtaaaattactacaaaaacttgatgcttcgagtcaagatagtacccgaatcgttcataatagtcactgccaagcactaacaaa |
122 |
Q |
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| T |
6753454 |
tttgaacatgtaataatgtaaaatgactgcaaaaacttgatgcttcgagtcaagatagtacccgaatcgttcataatagtcactgccaagcactaacaaa |
6753553 |
T |
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| Q |
123 |
cacagctaaagactttaaagtttattggtggggcatttacttcaactttcactgaaaacaccttacac |
190 |
Q |
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| T |
6753554 |
cacagttaaagactttaaagtttattggtggggcatttacttccactttcaccgaaaacacctaacac |
6753621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 6793275 - 6793350
Alignment:
| Q |
86 |
gaatcgttcataatagtcactgccaagcactaacaaacacagctaaagactttaaagtttattggtggggcattta |
161 |
Q |
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| T |
6793275 |
gaatcgttcacaatagtctttgccaagcactatcaaacacagttaaagactttaaagtttattggtgggacattta |
6793350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 6804057 - 6804108
Alignment:
| Q |
112 |
gcactaacaaacacagctaaagactttaaagtttattggtggggcatttacttc |
165 |
Q |
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| T |
6804057 |
gcactaacaaacacagctaaagact--aaagtttattggtggggcatttacttc |
6804108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 9721114 - 9721176
Alignment:
| Q |
99 |
tagtcactgccaagcactaacaaacacagctaaagactttaaagtttattggtggggcattta |
161 |
Q |
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| T |
9721114 |
tagtaactgcaatgcactaacaaacatagctaaagactttaaagtttattgctggggcgttta |
9721176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 7602978 - 7602944
Alignment:
| Q |
109 |
caagcactaacaaacacagctaaagactttaaagt |
143 |
Q |
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| T |
7602978 |
caagcactaacaaacacagctaaagactttaaagt |
7602944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 7602940 - 7602899
Alignment:
| Q |
130 |
aaagactttaaagtttattggtggggcatttacttcaacttt |
171 |
Q |
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| T |
7602940 |
aaagactttaaagtttattggtggggcctttacttcgacttt |
7602899 |
T |
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