View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19696_low_3 (Length: 525)
Name: NF19696_low_3
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 515
Target Start/End: Original strand, 1793520 - 1794016
Alignment:
| Q |
20 |
tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
1793520 |
tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgcgtgtttagaagctcgcctaatcttaaagaactacatatattagtgagtg |
1793619 |
T |
|
| Q |
120 |
atcatttagtttggcttaactttgtttatgcatttgtgtcatgtttttcagttctagaatttgcaaactttgtctgccttaaagtatttgtctagtgcct |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1793620 |
ctcatttagtttggcttgactttgtttatgcttttgtgtcatgtttttcagttctagaatttgcaaactttgtctggcttaaagtatttgtctagtgcct |
1793719 |
T |
|
| Q |
220 |
ttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1793720 |
ttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaaatagaacttatgagtcaggctcaatttagtgtagtagagt |
1793819 |
T |
|
| Q |
320 |
cctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgccctttttgtacgaacctcccccctttgatttttg |
419 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
1793820 |
ccttt-aatgagagactcatgtaccttctttttcatcttttatcaatcaatatactttttatctgtcctttttgtacgaacctcccccctttgatttttg |
1793918 |
T |
|
| Q |
420 |
gatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttccgcctttg |
515 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1793919 |
gatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagttttaatatgctctatgtctctcttatgcatactatctttcctcctttg |
1794016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 2012773 - 2012889
Alignment:
| Q |
20 |
tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta |
119 |
Q |
| |
|
|||||||| ||||||||| | |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
2012773 |
tggttaagtataaacttctacgacttgaaagaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaaagaattaaatatatttgtgagta |
2012872 |
T |
|
| Q |
120 |
atcatttagtttggctt |
136 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2012873 |
ctcatttagtttggctt |
2012889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 2011275 - 2011388
Alignment:
| Q |
19 |
atggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagt |
118 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
2011275 |
atggttaagtataaacttcaatgagttgaaggaaatttcaactgctctaagtgtgttcagaagctcgcctaatcttaaagaactaaaaatatttgtgagt |
2011374 |
T |
|
| Q |
119 |
aatcatttagtttg |
132 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
2011375 |
actcatttactttg |
2011388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 2007290 - 2007408
Alignment:
| Q |
20 |
tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgag-- |
117 |
Q |
| |
|
||||| || ||||||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
2007290 |
tggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcaggagctcgcctaatcttaaagaattaaatatatttgtgagta |
2007389 |
T |
|
| Q |
118 |
-taatcatttagtttggct |
135 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
2007390 |
ctactcatttagtttggct |
2007408 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 2020529 - 2020651
Alignment:
| Q |
20 |
tggttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta |
119 |
Q |
| |
|
||||| || ||||||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| | ||| | ||||||| |
|
|
| T |
2020529 |
tggtttagtataaacttctatgactttaaggaaatttcaactgctctatgtgtgttcagaagctcgcctaatcttaaaaaactagaaataattgtgagta |
2020628 |
T |
|
| Q |
120 |
atcatttagtttggcttaacttt |
142 |
Q |
| |
|
||||||| |||| ||| ||||| |
|
|
| T |
2020629 |
ctcatttactttgacttgacttt |
2020651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 3373532 - 3373624
Alignment:
| Q |
27 |
gcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || | |||||||| |||||||||||| || || | ||||| ||||||| |
|
|
| T |
3373532 |
gcataaacttcaatgacttgaaggaaatttcagctgctctttgcttgctcagaagctcacctaatcttaaaaaattagaaatatttgtgagta |
3373624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 2007511 - 2007587
Alignment:
| Q |
201 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
277 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
2007511 |
aagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac |
2007587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
| Q |
303 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
371 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
2007641 |
atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 2020712 - 2020788
Alignment:
| Q |
201 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
277 |
Q |
| |
|
|||||||||| |||| | ||| ||||| || | |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
2020712 |
aagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttac |
2020788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 3379557 - 3379664
Alignment:
| Q |
29 |
ataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagtaatcatttag |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| || || || | |||||||| ||||| |||||| || | | ||||| ||||||| | |||||| |
|
|
| T |
3379557 |
ataaacttcaatgtcttgaaggaaatttcggctgccctttgcttgctcagaagctcccctaaccttaaaaaattggaaatatttgtgagtacttatttag |
3379656 |
T |
|
| Q |
129 |
tttggctt |
136 |
Q |
| |
|
|||||||| |
|
|
| T |
3379657 |
tttggctt |
3379664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 2012992 - 2013074
Alignment:
| Q |
198 |
ttaaagtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa |
279 |
Q |
| |
|
||||||||||||| |||||||||| | |||| |||||||||||||||||| | |||||||| |||| |||||||| ||||| |
|
|
| T |
2012992 |
ttaaagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa |
2013074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
368 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
444 |
Q |
| |
|
|||||||||||||| | ||| | | ||| ||||| ||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 3342075 - 3342107
Alignment:
| Q |
24 |
taagcataaacttcaatgacttgaaggaaattt |
56 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
3342075 |
taagcataaacttcaatgacttgaagaaaattt |
3342107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 6601051 - 6600959
Alignment:
| Q |
27 |
gcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagta |
119 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||| || | || |||||||| |||||||| |||||| | ||||||||||||| |
|
|
| T |
6601051 |
gcataaacttctatgattcaaaggaaatttcagctgctctttgccttttcagaagctcacctaatctacgagaactcgaaatattggtgagta |
6600959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 20935257 - 20935367
Alignment:
| Q |
26 |
agcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatcttaaagaactaaatatattggtgagtaatcatt |
125 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| || || | |||||||| ||||||||| | || || | ||||| ||||||| ||||| |
|
|
| T |
20935257 |
agcataaacttcgatgacttgaaggaaatttcggctgctctttgcttgctcagaagctcacctaatcttcgaaaattagaaatatttgtgagtactcatt |
20935356 |
T |
|
| Q |
126 |
tagtttggctt |
136 |
Q |
| |
|
|||||| |||| |
|
|
| T |
20935357 |
tagtttagctt |
20935367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
| Q |
464 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
508 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttcc |
20954255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
| Q |
464 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
508 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcc |
20936014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 508
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
| Q |
464 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
508 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||| |||||||| |
|
|
| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcc |
39275156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 21238302 - 21238373
Alignment:
| Q |
22 |
gttaagcataaacttcaatgacttgaaggaaatttcagctgctctatgtgtgtttagaagctcgcctaatct |
93 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||| || || | |||||||| |||||||| |
|
|
| T |
21238302 |
gttaaacataaacttcaatgacttgaaggaaatctcggctgctctctgcttgctcagaagctcacctaatct |
21238373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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