View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19696_low_5 (Length: 457)
Name: NF19696_low_5
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 442
Target Start/End: Original strand, 35274655 - 35275094
Alignment:
| Q |
6 |
acaaataatggtttagagttattgatggaaccaatttaatagtttttt-ctgtgaagtggtgagttggagagatgtgtacaaataaaactcacttaaaca |
104 |
Q |
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| T |
35274655 |
acaaataatggtttagagttattgatggaactaatttaatagtttttttctatgaagtggtgagttggagagatgtgtataaataaaactcacttaaaca |
35274754 |
T |
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| Q |
105 |
ctcaaattggatgctactttgtacattgtctaaagacatttattaacatctgcatataaatataaaccttgaatttat-ttatttttaaacaaaatatat |
203 |
Q |
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| T |
35274755 |
ctcaaattggatgctactttgtacattgtctaaagacatttattaacatctacatataaatatataccttgaatttttattttttttaaacaaaatatat |
35274854 |
T |
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| Q |
204 |
accttgaattgaaacaaacaagatttggtttcatattcaaggaatttaggaatatcgggtaagtactcataaaaacaaaaccaatatacgttaggtcaaa |
303 |
Q |
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| T |
35274855 |
accatgaattgaaacaaacaagatttggtttcatattcaaggaatttaggaatatcgggtaagtactgataaaaacaaaaccaatatacgttaggtcaaa |
35274954 |
T |
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| Q |
304 |
tttgaatataaaattcaaattcattttttattggtatgaaggaggggaaaccaaattcatgttatgcaatcagaatgatattcttaatatt-nnnnnnnn |
402 |
Q |
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| T |
35274955 |
tttgaatataaaattcaaattcattttttattggtatgaaggaggggaaaccaaattcattttatgcaatcagaatgatattcttaatattaaaaaaaaa |
35275054 |
T |
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| Q |
403 |
ncgatatttttaattatatcttgtacacgctgtcaatata |
442 |
Q |
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| T |
35275055 |
acgatatttttaattatatcttgtacacgctgtcaatata |
35275094 |
T |
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