View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19696_low_7 (Length: 370)
Name: NF19696_low_7
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 17611132 - 17610806
Alignment:
| Q |
7 |
gagagaagaataagggaaaaagtttaaaacctttcggcatgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattata |
106 |
Q |
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| T |
17611132 |
gagagaagaataagggaaaaagtttaaaacctttcggcatgttgttacaggatcatcagagtaaaatggaggataaccgacaagcatttcatacattata |
17611033 |
T |
|
| Q |
107 |
gcgccaagagaccacctgcagcaagtcagaatacatgttggaaacaaggaagatatttcatttcaaaaaggaataaattcaaaaacccccagagaattct |
206 |
Q |
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| T |
17611032 |
gcgccaagagaccacctgcagcaagtcagaatacatgttggaaacaaggaagatatttcatttaaaaaaggaataaattcaataacccccagagaattct |
17610933 |
T |
|
| Q |
207 |
taatgacgaataataaggaattgtatgatcctgaactcataatgaggaattcttaaaactagatagaatttgttttcttcgaagtgttttaactttaaga |
306 |
Q |
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| T |
17610932 |
taatgacgaataataaggaattgtatgatcctgaactcataatgaggaattcttaaaactagatagaatttgtttccttcgaagtgttttaactttaaga |
17610833 |
T |
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| Q |
307 |
aagaaacaataacttagaacaaagata |
333 |
Q |
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| T |
17610832 |
aagaaacaataacttagaacaaagata |
17610806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 48260487 - 48260398
Alignment:
| Q |
35 |
acctttcggcatgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
124 |
Q |
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| T |
48260487 |
acctttctgcatgtggttattgggtcatcagagtaaaatggagggtaaccgaccagcatttcgtacattatcgctcccagtgaccacctg |
48260398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 15869996 - 15870050
Alignment:
| Q |
70 |
aaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
124 |
Q |
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| T |
15869996 |
aaatggtggataccctacaagcatttcatacattatggctccaagagaccacctg |
15870050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 15922564 - 15922620
Alignment:
| Q |
68 |
taaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
124 |
Q |
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| T |
15922564 |
taaaatggcggataccccacaagcatttcatacattatggctcctagagaccacctg |
15922620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 5815947 - 5815881
Alignment:
| Q |
56 |
ggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacc |
122 |
Q |
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| T |
5815947 |
ggatcatcagaacaaaatggaggatatccaacaagcatctcatacaagattgccccaagagaccacc |
5815881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 30392950 - 30393030
Alignment:
| Q |
44 |
catgttgttataggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
124 |
Q |
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| T |
30392950 |
catgttgtcattggatcatcagaataaaaaggtggatatcccaccaacatttcatacatgatagcaccgagtgaccacctg |
30393030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 39056613 - 39056545
Alignment:
| Q |
56 |
ggatcatcagagtaaaatggaggataaccgacaagcatttcatacattatagcgccaagagaccacctg |
124 |
Q |
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| T |
39056613 |
ggatcatcagaataaaaaggtggatatcccaccaacatttcatacataatagctccaagtgaccacctg |
39056545 |
T |
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