View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19696_low_8 (Length: 361)
Name: NF19696_low_8
Description: NF19696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19696_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 10626344 - 10626673
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10626344 |
aatattaacttctatttggagaattctatagtcacttggctgaggcaagacgcgtttagcacaaataattatttattctttgttg----------gattt |
10626433 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
10626434 |
ggtggacacgaaactcactttgtatggagaatgagataatttctattttctcctcgaatgtaaaaatttacaattttgcagcccttctttgttttgtttt |
10626533 |
T |
|
| Q |
207 |
ctcttcggttttatccacggatataggaggtcgttatgtcttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10626534 |
ctcttcggttttatccacggatataagaggtcgttatgtcttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaa |
10626633 |
T |
|
| Q |
307 |
tcctggaataaccaattttggtggtgttcttcgtagtaat |
346 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10626634 |
tcctggaataaccaattttggttgcgttcttcgtagtaat |
10626673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 34596340 - 34596629
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| || |||||| | |||||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
34596340 |
aatattaacttctacttggggaattctctggtcacttggctcagacaaggcgcatttagcgcaaataattatttattctctgctgctctttggtggattt |
34596439 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttg------aatgtaaaaatttacaatttggcagcccttctttgttc |
200 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| ||| |
|
|
| T |
34596440 |
ggtgcgctcgaaactcactttgtatggagaatgagataatttctattttctccttgaaggtaaaggtaaaaatttacaatttggcaacccttcttcgttt |
34596539 |
T |
|
| Q |
201 |
tgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttga |
288 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
34596540 |
tgttttctctccggcattatccacggatataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttga |
34596629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 62 - 316
Target Start/End: Complemental strand, 10951663 - 10951407
Alignment:
| Q |
62 |
ttagcacaaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctcctt |
161 |
Q |
| |
|
||||| |||||| | ||||||||| || ||||||||| ||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10951663 |
ttagcgcaaatagtcatttattctctgctgctctttggtggatttggtgcgctcgaaactcattttgtatggagaatgagacgatttctattttctcctt |
10951564 |
T |
|
| Q |
162 |
gaatgtaaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggag |
259 |
Q |
| |
|
||| |||||||||||||||||| ||| ||||| | |||||||||||||| ||| |||||||| ||||||| |||| ||||||| |||||||| | ||| |
|
|
| T |
10951563 |
gaaggtaaaaatttacaatttgtcagtccttcctagttctgttttctctccggcattatccacagatatagaaggttgttatgtgacttggcatctagag |
10951464 |
T |
|
| Q |
260 |
gagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaata |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
10951463 |
gagagtatggtcgttgtcttgaatgttgatggcaacaattttgaaaatcctggaata |
10951407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 22911719 - 22911416
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| || |||||| |||||||| || ||||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
22911719 |
aatattaacttctagttggggaattctctggtcacttggctcagacaaggcgcgtttagcgcatataatcatttattctctgctgctctttggtggattt |
22911620 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
|||| | ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22911619 |
ggtgcgctcgaaagtcactttgtatggagaatgagataatttctattttttccttgaaggtaaaaatttacaatttggcagcccttctttgttctgtttt |
22911520 |
T |
|
| Q |
207 |
ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttgga |
304 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||| ||||||| |||||||| ||||||||||||| | |||| |||||||||| | || || ||||||| |
|
|
| T |
22911519 |
ctctccggcattatccacagatatagg-ggttgttatgtgacttggcatccagaggagagtatggcctttgtcttgaatgttgttggcagcagttttgga |
22911421 |
T |
|
| Q |
305 |
aatcc |
309 |
Q |
| |
|
||||| |
|
|
| T |
22911420 |
aatcc |
22911416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 3154955 - 3155193
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | ||| || || ||| |||||||||||||||| ||||||||| || ||||||| || |||| |
|
|
| T |
3154955 |
aatattaacttctatttggtgaattctatggtcacctagctcagacagggcgagtttagcacaaataatcatttattctatgcgtctctttggtgaattt |
3155054 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
||| ||||||| || |||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
3155055 |
tgtgcgcacgaaattcactttgtatggggaatgatataatttgtattttctccttgaaggtaaaaatttataatttggcagcctttctttgttgtgtttt |
3155154 |
T |
|
| Q |
207 |
ctcttcggttttatccacggatataggaggtcgttatgt |
245 |
Q |
| |
|
|||| ||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
3155155 |
ctctccggctttatccacgtatagaggaggtcgttatgt |
3155193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 13995647 - 13995470
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||| | |||||||| |||||| |||||||| ||||||| | || | || || ||||||| |
|
|
| T |
13995647 |
aatattaacttctatttgtagaattctacggtcatctggctcaaacaaggcacctttagcgcaaataatcatttattatctgctaatcgtttgtggattt |
13995548 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttgg |
184 |
Q |
| |
|
||| |||| |||||| ||||||||||||| |||||||||||||||||| ||||| || |||||||| ||||| |||| |
|
|
| T |
13995547 |
tgtgcacacaaaactcactttgtatggagagtgagataatttctattttatccttaaaggtaaaaatctacaacttgg |
13995470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 13995400 - 13995349
Alignment:
| Q |
258 |
aggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcc |
309 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
13995400 |
aggagagtctggccgttgtcttgaatgttgatgacatcaattttggaaatcc |
13995349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 30407259 - 30406948
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||||||||||| |||| ||| ||| | ||||||||| || ||||| ||||| || |||||||| ||||||||| || |||||||| ||||||| |
|
|
| T |
30407259 |
aatattaacttctacttggggaactctctggccacttggctcagacaaggtgcgtttggcgcaaataatcatttattctctgctgctcttttgtggattt |
30407160 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
30407159 |
ggtgcgctcgaaactcactttgtatggagaatgagataatttatattttcttcttgaaggtaaaaatttacaatttgacagcccttattcgttctgtttt |
30407060 |
T |
|
| Q |
207 |
ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgttgacgacaacaattttgga |
304 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||| | |||| ||||||| |
|
|
| T |
30407059 |
ctcttcgacattatccacagatataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttgatggcaacggttttgga |
30406960 |
T |
|
| Q |
305 |
aatcctggaata |
316 |
Q |
| |
|
||| ||||||| |
|
|
| T |
30406959 |
aattttggaata |
30406948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 68 - 342
Target Start/End: Complemental strand, 53244827 - 53244553
Alignment:
| Q |
68 |
caaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgt |
167 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||| ||| ||| || |
|
|
| T |
53244827 |
caaataataatttattctttgttgttctttgatggatttggtgcgcaggaaactcactttgtatggagaatgagataatctctattttcccctagaaggt |
53244728 |
T |
|
| Q |
168 |
aaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagt |
265 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||| ||||| || ||||||||| |||||||| ||| |||||| |||||||| ||||||||||| |
|
|
| T |
53244727 |
aaaaatttacaatttggcggtccttctttgttttgttctctct--ggccttatccacgaatataggacgtcattatgtgacttggcatctggaggagagt |
53244630 |
T |
|
| Q |
266 |
atggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaataaccaattttggtggtgttcttcgtag |
342 |
Q |
| |
|
|||| | |||| ||||||||||| |||||||||||||||||||| | |||| | |||||||||| ||||| ||||| |
|
|
| T |
53244629 |
atggccattgtcttgaatgttgatgacaacaattttggaaatcccgaaatatcttattttggtggcgttctccgtag |
53244553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 7408128 - 7408409
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
|||||| ||||| ||| |||| |||||| |||||| |||| | ||||||| ||| || ||||| | ||||||||| | ||||||||| ||||||| |
|
|
| T |
7408128 |
aatattcacttcaattgggagcattctatagtcacaaggctcaaacaaggcatgttaagtggaaatattcatttattctcttatgctctttggtggattt |
7408227 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
|||| || |||||| ||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
7408228 |
ggtgtgcattaaactcactttgtatgcagaatgagataatttctatttttttcttgaaggtaaaaatttacaatttggcagcccttctctgttttgtttt |
7408327 |
T |
|
| Q |
207 |
ctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttggaggagagtatggtcgttgtgttgaatgtt |
286 |
Q |
| |
|
|| || |||||||||| |||| |||||||||||| | |||| || | || || |||||||||||||| ||||||||| |
|
|
| T |
7408328 |
cttcctggctttatccacgaatattggaggtcgttatatgacttgacacctagatgaaagtatggtcgttgtcttgaatgtt |
7408409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 37706615 - 37706830
Alignment:
| Q |
7 |
aatattaacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggattt |
106 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||| ||||| ||||||||| |||||||||||||||| ||| ||||| || ||||||||| ||||||| |
|
|
| T |
37706615 |
aatattaacttttatttggggaattctatggtcacatggctcaggcaaggcgtgtttagcacaaataatcatt-attctctgctgctctttggtggattt |
37706713 |
T |
|
| Q |
107 |
ggtggacacgaaactccctttgtatggagaatgagataatttctattttctccttgaatgtaaaaatttacaatttggcagcccttctttgttctgtttt |
206 |
Q |
| |
|
|||| | |||||||| |||||| | ||||||||||||||||||||| |||| ||||| || ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
37706714 |
ggtgcgctcgaaactctctttgtttagagaatgagataatttctattgtctctttgaaggtgaaaatctacaatttggcagcccttcttcattctgtttt |
37706813 |
T |
|
| Q |
207 |
ctcttcggttttatcca |
223 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
37706814 |
ctctccggctttatcca |
37706830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 60 - 330
Target Start/End: Complemental strand, 15402931 - 15402659
Alignment:
| Q |
60 |
gtttagcacaaataattatttattctttgttgctctttgctggatttggtggacacgaaactccctttgtatggagaatgagataatttctattttctcc |
159 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| ||||||||||| | | ||| || || |||||||||||||| ||||||| ||| || | | |
|
|
| T |
15402931 |
gtttagcgcaaataatcatttattcttttatgctctttggtggatttggtgcgctcaaaagtcactctgtatggagaatgaaataatttatatattttgc |
15402832 |
T |
|
| Q |
160 |
ttgaatgtaaaaatttacaatttggcagcccttctttgttctgttttctcttcggttttatccacggatataggaggtcgttatgt--cttggcatttgg |
257 |
Q |
| |
|
||||| ||| || |||| |||| |||| |||||||| |||||||||||||| || |||| |||| ||||| ||||||||||||| ||||| || | |
|
|
| T |
15402831 |
ttgaaggtagaattttataattcggcaacccttcttcgttctgttttctctccgactttaaccacatatataagaggtcgttatgtgacttggtatcctg |
15402732 |
T |
|
| Q |
258 |
aggagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaataaccaattttggtgg |
330 |
Q |
| |
|
|| |||||| ||| ||||| ||||||||||| | ||||||||| | |||||| |||||| | | ||||||||| |
|
|
| T |
15402731 |
agaagagtacggttgttgtcttgaatgttgatggcaacaatttcgaaaatcccggaatatctagttttggtgg |
15402659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 3258713 - 3258571
Alignment:
| Q |
12 |
taacttctatttggagaattctacagtcacttggcttaggcaaggcacgtttagcacaaataattatttattctttgttgctctttgctggatttggtgg |
111 |
Q |
| |
|
||||||||||| |||| |||||| |||||| ||||| || ||||| ||||| |||||| ||||||||||||||||| |||| || |||||| | |
|
|
| T |
3258713 |
taacttctattgggagcattctatagtcacgtggctcagacaaggggtgtttaatgtgaataatcatttattctttgttgctatttgatgcatttggcgc |
3258614 |
T |
|
| Q |
112 |
acacgaaactccctttgtatggagaatgagat-aatttctatt |
153 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
3258613 |
gcacgaaactctctttgtatggagaatgatataaatttctatt |
3258571 |
T |
|
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