View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19697_high_10 (Length: 276)
Name: NF19697_high_10
Description: NF19697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19697_high_10 |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 22449520 - 22449246
Alignment:
| Q |
11 |
cataggtaagttgatagagctttatcagtttcataatcaaatcattgtttttcagggacttagtcataattaatattgaatgttgctttattgaatgtca |
110 |
Q |
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| T |
22449520 |
cataggtaagttcatagagctttatcagtttcataatcaaatcattgtttttcagggacttagttataattaatattgaatgttgctttattgaatgtca |
22449421 |
T |
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| Q |
111 |
actcaggtgcagtggggggtaaataatttaatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtcttagtcaa |
210 |
Q |
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| T |
22449420 |
actcaggtgcagtggggggtaaataatttaatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtgttagtcaa |
22449321 |
T |
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| Q |
211 |
aagaaag---------actcaggttaaagattatttcaaccatggtttaagttcaatactcccaattgattcaac |
276 |
Q |
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| T |
22449320 |
aagaaagactttgttaactcaggttaaagattatttcaaccatggtttcagttctatactcccaattgattcaac |
22449246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 22437918 - 22438069
Alignment:
| Q |
139 |
taatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtcttagtcaaaagaaag--------------actcagg |
224 |
Q |
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| T |
22437918 |
taatttagttttgaatgggcaattggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctgg |
22438017 |
T |
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| Q |
225 |
ttaaagattatttcaaccatggtttaagttcaatactcccaattgattcaac |
276 |
Q |
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| T |
22438018 |
ttaaagattgtttcaaccatggtttaagtttaatactcccaattgattcaac |
22438069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 22446255 - 22446395
Alignment:
| Q |
139 |
taatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtcttagtcaaaagaaagact-------caggttaaaga |
231 |
Q |
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| T |
22446255 |
taatttagttttgaatgggc----ggctatgcaatgtgaggtgtagtttaaccattttaaagacttggtcaaaagaaaaactttgttaactggttaaaga |
22446350 |
T |
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| Q |
232 |
ttatttcaaccatggtttaagttcaatactcccaattgattcaac |
276 |
Q |
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| T |
22446351 |
ttgtttcaaccatggtttaagttcaatactccaaattgattcaac |
22446395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 22449169 - 22449044
Alignment:
| Q |
141 |
atttagttttgaatgggcaa-ttggctatgcaatgtaaggtgtaatttaatcattttaaagtcttagtcaaaagaaag---------actcaggttaaag |
230 |
Q |
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| T |
22449169 |
atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcaaaagaaagactttgttaactcaggttaaag |
22449070 |
T |
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| Q |
231 |
attatttcaaccatggtttaagttca |
256 |
Q |
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| T |
22449069 |
attatttcaaccatggtgtaagttca |
22449044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 276
Target Start/End: Original strand, 22439951 - 22440106
Alignment:
| Q |
130 |
taaataatttaatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtcttagtcaaaagaaag---------act |
220 |
Q |
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| T |
22439951 |
taaataatttaaattagttttgaatcgccaattggctatgcaatgtgaggtaatctttaaccattttaaagtcttggacaaaagaaagactttgttaact |
22440050 |
T |
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| Q |
221 |
caggttaaagattatttcaaccatggtttaagttcaatactcccaattgattcaac |
276 |
Q |
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| T |
22440051 |
caggttaaagattgtttccaccatggtttaagtttaataatcccaactgattcaac |
22440106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 22449046 - 22448990
Alignment:
| Q |
220 |
tcaggttaaagattatttcaaccatggtttaagttcaatactcccaattgattcaac |
276 |
Q |
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| T |
22449046 |
tcaggttaaagattgtttcaaccatggtttaagttcaatactcccaattgattcaac |
22448990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 22359293 - 22359355
Alignment:
| Q |
218 |
actcaggttaaagattatttcaaccatggtttaagttcaa----tactcccaattgattcaac |
276 |
Q |
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| T |
22359293 |
actcaggttaaagattgtttcaaccatggtttaagtttaattctttctcccaattgattcaac |
22359355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 22369195 - 22369257
Alignment:
| Q |
218 |
actcaggttaaagattatttcaaccatggtttaagttcaa----tactcccaattgattcaac |
276 |
Q |
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| T |
22369195 |
actcaggttaaagattgtttcaaccatggtttaagtttaattctttctcccaattgattcaac |
22369257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 28416 - 28358
Alignment:
| Q |
38 |
gtttcataatcaaatcattgtttttcagggacttagtcataattaatattgaatgttgc |
96 |
Q |
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| T |
28416 |
gtttcataatcaaatcattgtttttcaagtacccagtcataattgatattgaatattgc |
28358 |
T |
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